View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_low_22 (Length: 266)
Name: NF12077_low_22
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 52618317 - 52618553
Alignment:
| Q |
25 |
atagatcaggggtctagttacatccggtctggttcggcgattttgtagaaactaaatgaatgcgacgtcgtttttagagaaccagaacctctgacacttg |
124 |
Q |
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| T |
52618317 |
atagatcaggggtctagttacatccggtctggttgggcgattttgtagaaactaaatgaatgcgacgtcgtttttagagaaccagaacctctgacacttg |
52618416 |
T |
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| Q |
125 |
ccctaaccccctgattcacaaccgcatactcgccggagcaccaccctcaacgttgcgtcgttcacgcaaactcgccgggaaagtcaccatcatcaaatcc |
224 |
Q |
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| T |
52618417 |
ccctaaccccctgattcacaaccacatactcgccggagcaccaccctcaacgttgagtcgttcacgcaaactcgccgggaaagtcaccgtcatcaaatcc |
52618516 |
T |
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| Q |
225 |
tccttgtaagttcttctcttccattttctctgcttct |
261 |
Q |
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| T |
52618517 |
tccttgtaagttcttctgttccattttcactgattct |
52618553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 76 - 244
Target Start/End: Complemental strand, 4229248 - 4229080
Alignment:
| Q |
76 |
ctaaatgaatgcgacgtcgtttttagagaaccagaacctctgacacttgccctaaccccctgattcacaaccgcatactcgccggagcaccaccctcaac |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4229248 |
ctaaatgaatgcgacgtcgtttttagagaaccagaacctctgacacttgccctaaccccctgattcacaaccgcatactcgccggagcaccaccctcaac |
4229149 |
T |
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| Q |
176 |
gttgcgtcgttcacgcaaactcgccgggaaagtcaccatcatcaaatcctccttgtaagttcttctctt |
244 |
Q |
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| T |
4229148 |
gttgcgtcgctcacgcaaactcgccgggaaagtcaccatcatcaaatcctccttgtaagttcttctctt |
4229080 |
T |
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