View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_low_23 (Length: 257)
Name: NF12077_low_23
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40708862 - 40709086
Alignment:
| Q |
1 |
atgtgagtcacacactcacacacattgaattgggtctcacttaaactgaagagacccatatgaattcatcttgaatgttagagtgagagttgaatnnnnn |
100 |
Q |
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| T |
40708862 |
atgtgagtcacacactcacacacattgaattgggtctcacttaaactgaagagacccatatgaattcatcttgaatgttagagtgagagttgaataaaaa |
40708961 |
T |
|
| Q |
101 |
nnngtgtttttaacacttctctagtttaatattccatctattatacaaaaaaggttagtttaatatttaggtaaagtgaccaaatgtaacatgtcgaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40708962 |
aaagtgtttttaacacttctctagtttaatattccatctattatacaaaaaaggttagtttaatatttaggcaaagtgaccaaatgtaacatgtcgaaca |
40709061 |
T |
|
| Q |
201 |
cacatttaatgtgaagtgtctcttc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
40709062 |
cacatttaatgtgaagtgtctcttc |
40709086 |
T |
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