View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12077_low_3 (Length: 683)
Name: NF12077_low_3
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_3 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 15 - 660
Target Start/End: Original strand, 6231910 - 6232564
Alignment:
| Q |
15 |
ataaagtggttgaaacagcggctcatctctttcttcattgtgagtggatgtttaaagtgtggtcgaaggtaggtggttgcttggggataaatttcattac |
114 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6231910 |
ataaagtggttgaaacggcggcacatctctttcttcattgtgagtggacgtttaaagtgtggtcgaaggtaggtggttggttggggataaatttcattac |
6232009 |
T |
|
| Q |
115 |
acctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcggtgttatgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6232010 |
acctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcagtgttatgg |
6232109 |
T |
|
| Q |
215 |
tcgatttggaaagcgagaaatgataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gggaattgggcca |
312 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |
|
|
| T |
6232110 |
tcgatttggaaagcgagaaatgatatgatctttaacaatatttccaaggattttggtgaattggtggaggatattaaggtgatttcgtggaattgggcta |
6232209 |
T |
|
| Q |
313 |
attctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
6232210 |
attctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagataatgtggggcagttttagaggtgtccgg |
6232309 |
T |
|
| Q |
413 |
gacttttgtctgttgaggttgctgtagttctgctgcac------ggcttttgttttctgctatgccagttttctg-ttgttgctgtttttctgttatagc |
505 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
6232310 |
gacttttgtctgttgaggttgctttagttctgctgcactttttgggcttttgttttctgctatgccagttttctgtttgttgcggtttttctggtatagc |
6232409 |
T |
|
| Q |
506 |
tgccggttcaggggtttagttttggtttgggtgcaggttggctgtggttatcagcagtattacagacttagtgcttttttctgttttggcgcttttgccg |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | |
|
|
| T |
6232410 |
tgccggttcaggggtttagttttggtttgggtgcaggttggctgtggttatcagcagtattacaaccttagtgcttttttctgtttatgcgcttttgcag |
6232509 |
T |
|
| Q |
606 |
tcaccatgtatttgtactccttgtataagctggtattaataagataagctgtttc |
660 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6232510 |
tcaccatgtatttgtactccttgtataagctggtattaataagataagctgtttc |
6232564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 48887886 - 48888289
Alignment:
| Q |
18 |
aagtggttgaaacagcggctcatctctttcttcattgtgagtggatgtttaaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacc |
117 |
Q |
| |
|
||||||||||||| || | |||||||| || ||||| ||||| | ||| ||||| ||||||||||| |||||||| |||||| | | || || |||| |
|
|
| T |
48887886 |
aagtggttgaaacggctgtgcatctcttcctacattgcgagtgaacgttcaaagtatggtcgaaggtcggtggttggttggggtttagcttgatcacact |
48887985 |
T |
|
| Q |
118 |
tcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcg |
217 |
Q |
| |
|
| || |||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||| | ||| |||||| || |
|
|
| T |
48887986 |
gtattctctttttaatcattttgagtgttggaatggggagattgggaggcgaaagcttcgcaaagggtattggatgatttggcatgtggtcttatggacg |
48888085 |
T |
|
| Q |
218 |
atttggaaagcgagaaatgataggatctttaa--caatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gggaattgggccaa |
313 |
Q |
| |
|
||||||||||| | |||||||| || || || || || | || || || ||||||||||| || |||||||||||| | | ||||||||| || |
|
|
| T |
48888086 |
atttggaaagctcggaatgatagaattttcaagtcactagt--gaaagagttcggtgaaatggttgatgatattaaggtgctctcgtggaattgggtgaa |
48888183 |
T |
|
| Q |
314 |
ttctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccggg |
413 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| | || |||| |||||| |||| |||||||||||||| |
|
|
| T |
48888184 |
ttctagactaaagagtcctccttgcctctattacgagtggtgttggaaccccaaggaatgtcttttgagat-tggtggggtagttctagaggtgtccggg |
48888282 |
T |
|
| Q |
414 |
acttttg |
420 |
Q |
| |
|
||||||| |
|
|
| T |
48888283 |
acttttg |
48888289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 19883566 - 19883466
Alignment:
| Q |
315 |
tctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccggga |
414 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||| | ||||| |||||||||||||||||||| |
|
|
| T |
19883566 |
tctagactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagat-agttggggtagttttagaggtgtccggga |
19883468 |
T |
|
| Q |
415 |
ct |
416 |
Q |
| |
|
|| |
|
|
| T |
19883467 |
ct |
19883466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 215 - 374
Target Start/End: Original strand, 44346382 - 44346543
Alignment:
| Q |
215 |
tcgatttggaaagcgagaaatgataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgatttggg--aattgggcca |
312 |
Q |
| |
|
||||||||||||| ||| || |||||||| || || | | ||| ||||||| | | |||||| || || ||||| |||||| ||| | |||||||| | |
|
|
| T |
44346382 |
tcgatttggaaagtgaggaacgataggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtgtaattgggcga |
44346481 |
T |
|
| Q |
313 |
attctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgc |
374 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
44346482 |
attctagacttaaaagtcctccttgcctcttttacaagtggtgctggaaccccaaagaatgc |
44346543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 19883654 - 19883600
Alignment:
| Q |
110 |
attacacctcaatccctttttcaacattttgagtgttggaatggggagattggga |
164 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
19883654 |
attacacctcaatctctgtttcaacattttgaatgttggagtggggagattggga |
19883600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 15 - 660
Target Start/End: Complemental strand, 381066 - 380413
Alignment:
| Q |
15 |
ataaagtggttgaaacagcggctcatctctttcttcattgtgagtggatgtttaaagtgtggtcgaaggtaggtggttgcttggggataaatttcattac |
114 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
381066 |
ataaagtggttgaaacggcggcccatctctttcttcattgtgagtggacgtttatagtgtggtcgaaggtaggtggttggttggggataaatttcattac |
380967 |
T |
|
| Q |
115 |
acctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcggtgttatgg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
380966 |
acctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcctcggaaaggttattggttgatttggcacgcagtgttatgg |
380867 |
T |
|
| Q |
215 |
tcgatttggaaagcgagaaatgataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gggaattgggcca |
312 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |
|
|
| T |
380866 |
tcgatttggaaagtgagaaatgataggatctttaacaatttttccaaggattttggtgaattggtggaggatattaaggtgatttcgtggaattgggcta |
380767 |
T |
|
| Q |
313 |
attctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
380766 |
attctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagataacgtggggcagttttagaggtgtccgg |
380667 |
T |
|
| Q |
413 |
gacttttgtctgttgaggttgctgtagttctgctgcac------ggcttttgttttctgctatgccagttttctgttgttgctgtttttctgttatagct |
506 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
380666 |
gacttttgtctgttgaggttgttgtagttctgctgcaccttttgggctattgttttctgctatgccagttttctgttgttgctatttttctgttatagtt |
380567 |
T |
|
| Q |
507 |
gccggttcaggggtttagttttggtttgggtgcaggttggctgtggttatcagcagtattacagacttagtgcttttttctgttttggcgcttttgccgt |
606 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||||| |
|
|
| T |
380566 |
gccggttcaggggtttagttttgttttgggtgcaggttggctgtggttatcagcagtattacaacctttgtgcttttttctgtttaggtgcttttgccgt |
380467 |
T |
|
| Q |
607 |
caccatgtatttgtactccttgtataagctggtattaataagataagctgtttc |
660 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
380466 |
caccatgtatttgtactccttgtataagctggtattaataagataagctgtttc |
380413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 436
Target Start/End: Original strand, 55328863 - 55329275
Alignment:
| Q |
25 |
tgaaacagcggctcatctctttcttcattgtgagtggatgtttaaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacctcaatcc |
124 |
Q |
| |
|
|||||| ||| ||||||| ||||| ||||| ||||||| |||||||| ||||||||||| |||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
55328863 |
tgaaacggcgactcatctttttctccattgcgagtggacttttaaagtttggtcgaaggttggtggttggttagggattaatttcattacacctcaatct |
55328962 |
T |
|
| Q |
125 |
ctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcgatttgga |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55328963 |
ctttttcaacattttgagtgttggaatggggagatagggaggcgtaaatttcaaaaaggatattggttgatttggcacgcggtgttatggacgatttgga |
55329062 |
T |
|
| Q |
225 |
aagcgagaaatgataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gggaattgggccaattctagact |
322 |
Q |
| |
|
||||||| ||||||||||| || || || ||| ||||||||||||||||| |||||||| ||||||||||||| | ||||| | ||||| ||||| |
|
|
| T |
55329063 |
aagcgaggaatgataggattttcaataaccttttgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtgaaattgaacgaattcaagact |
55329162 |
T |
|
| Q |
323 |
taggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttgtc |
422 |
Q |
| |
|
|| |||| |||| |||||||||||||||||||| ||||||| ||||||||||||||| |||| | |||||||||||||||||||||||| ||||||| | |
|
|
| T |
55329163 |
taagagttctccttgcctctattacgagtggtgttggaacctcaaggaatgcttattgagat-aggtggggcagttttagaggtgtccgtgactttttcc |
55329261 |
T |
|
| Q |
423 |
tgttgaggttgctg |
436 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
55329262 |
tgttgaggttgctg |
55329275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 68 - 420
Target Start/End: Original strand, 18847810 - 18848163
Alignment:
| Q |
68 |
aaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggc |
167 |
Q |
| |
|
||||||||| ||||||| ||| ||| |||| ||| ||||| ||||||||| || | | |||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
18847810 |
aaagtgtgggcgaaggtgtgtgtttggttggagattaattttattacaccttaaactatgtttcaacattttgaatgttggagtggggagattgggaaga |
18847909 |
T |
|
| Q |
168 |
gtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcgatttggaaagcgagaaatgataggatctttaacaatatttccaaggattt |
267 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||| ||||| ||| || || ||| |
|
|
| T |
18847910 |
aaaagctttgtaaagggtattggttgatttggcatgcggtattatggacgatttggaaagcaagaaatgataggatttttaataatcttgtgaaagatcg |
18848009 |
T |
|
| Q |
268 |
tggtgaaatggtggaggatattaaggtgatttg--ggaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaacccc |
365 |
Q |
| |
|
|| |||||| || || || ||||||||| |||| |||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
18848010 |
tgatgaaattgttgatgacattaaggtgctttggtggaattgggcggttactagacttaaaagtcctccctgcctctattacgagtggtgttggaacccc |
18848109 |
T |
|
| Q |
366 |
aaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg |
420 |
Q |
| |
|
||||||||| |||| |||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
18848110 |
aaggaatgcctattgagat-agttggggtagttttagaggtgtccgggacttttg |
18848163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 55353274 - 55353625
Alignment:
| Q |
25 |
tgaaacagcggctcatctctttcttcattgtgagtggatgtttaaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacctcaatcc |
124 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||| || ||||||||||| | ||| |||||||| ||||||| | |||||| || ||||||||| |
|
|
| T |
55353274 |
tgaaacggcggtccatctcttccttcattgtgagtgggccttcaaagtgtggtcaagggtgggtggttggttggggactagtttcatcactcctcaatcc |
55353373 |
T |
|
| Q |
125 |
ctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcgatttgga |
224 |
Q |
| |
|
| ||||||| ||| ||||||||||||||||||| |||||||| ||| | || |||||||||||| || ||||||| |||||| | ||||||||||||| |
|
|
| T |
55353374 |
ttatttcaacttttctagtgttggaatggggagatcgggaggcgcaagttgcgaaaaggttattggatggtttggcatgcggtgatgtggtcgatttgga |
55353473 |
T |
|
| Q |
225 |
aagcgagaaatgataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gggaattgggccaattctagact |
322 |
Q |
| |
|
||||||| ||||||||||| || || | || ||||||| ||| ||| || || || || || |||||||| | |||||||||| ||||| ||||| |
|
|
| T |
55353474 |
aagcgaggaatgataggattttcaattctcttgtcaaggatgttgctgatatcgttgatgacatcaaggtgatctcgtggaattgggcgaattccagact |
55353573 |
T |
|
| Q |
323 |
taggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgc |
374 |
Q |
| |
|
|| |||||||| ||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
55353574 |
taaaagtcctccttgcctcttttacgattggtgctggaaccccaagaaatgc |
55353625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 95 - 420
Target Start/End: Complemental strand, 42111329 - 42111003
Alignment:
| Q |
95 |
ttggggataaatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttga |
194 |
Q |
| |
|
|||||||| ||||| ||||| |||||| | || || ||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||| ||| |
|
|
| T |
42111329 |
ttggggattaattttattactcctcaaacgctcttccaacattttgagtgttggagtggggagattgggagactaaagcttcgtaaaggttattggatga |
42111230 |
T |
|
| Q |
195 |
tttggcacgcggtgttatggtcgatttggaaagcgagaaatgataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggt |
294 |
Q |
| |
|
||||||| ||||| | ||| ||||||||||| |||| ||||||||||| ||||| |||| || |||| ||| ||||| || || || |||||||| |
|
|
| T |
42111229 |
tttggcatgcggttctttggacgatttggaaaacgaggaatgataggatttttaattctattgtgaaagattatggggaaattgttgatgacattaaggt |
42111130 |
T |
|
| Q |
295 |
g--atttgggaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggg |
392 |
Q |
| |
|
| | | |||||||||| | | | ||||||| |||||||| ||||||| || |||||||| |||||||||||||||||||| | || | ||||| |
|
|
| T |
42111129 |
gctctcttggaattgggcgattacaagacttaagagtcctcactgcctcttttttgagtggtgttggaaccccaaggaatgcttgctccga-caggtggg |
42111031 |
T |
|
| Q |
393 |
gcagttttagaggtgtccgggacttttg |
420 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
42111030 |
gtagttttagaggtgtccgggacttttg |
42111003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 5e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 38970755 - 38971123
Alignment:
| Q |
19 |
agtggttgaaacagcggctcatctctttcttcattgtgagtggatgtttaaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacct |
118 |
Q |
| |
|
||||||||||| |||| | ||||| || |||||||| ||||||| || ||||||||||||||||| |||||||| || || ||||||||||||||| |
|
|
| T |
38970755 |
agtggttgaaatagcgacacatcttttccttcattgcgagtggactttcaaagtgtggtcgaaggtgggtggttggttacatattaatttcattacacct |
38970854 |
T |
|
| Q |
119 |
caatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcga |
218 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38970855 |
caatctctatttcatcattttgagtgttggaatggggagattgggaggcgtaaacttcggaaaggttattggttgatttggcacgcggtgttatggatga |
38970954 |
T |
|
| Q |
219 |
tttggaaagcgagaaatgataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gggaattgggccaattc |
316 |
Q |
| |
|
||||||||| ||| ||||||||||| || || ||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
38970955 |
tttggaaagagaggaatgataggattttcaaaaatcaaatgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtggaattgggcaaattc |
38971054 |
T |
|
| Q |
317 |
tagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagata |
385 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
38971055 |
tagacttaaaagtcctcattgcctctattacgagtggtgttggaaccccaaagaatgcttattgagata |
38971123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 16080467 - 16080514
Alignment:
| Q |
326 |
gagtcctccatgcctctattacgagtggtgctggaaccccaaggaatg |
373 |
Q |
| |
|
||||||||| ||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
16080467 |
gagtcctccttgcctcttttatgagtggtgttggaaccccaaggaatg |
16080514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 1e-92; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 36 - 420
Target Start/End: Complemental strand, 3678614 - 3678230
Alignment:
| Q |
36 |
ctcatctctttcttcattgtgagtggatgtttaaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacctcaatccctttttcaaca |
135 |
Q |
| |
|
|||||||||| || |||||||| ||| |||||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||| | |||||||| |
|
|
| T |
3678614 |
ctcatctcttcctccattgtgactgggcttttaaagtgtggtcgaaggtcggtgggtggttggggattaatctcattacacctcaatctatgtttcaaca |
3678515 |
T |
|
| Q |
136 |
ttttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcgatttggaaagcgagaaat |
235 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||| |||||| ||||| |||||||||| ||| | ||| |
|
|
| T |
3678514 |
ttttgagtgttggaatggggagatcgggaggagtaaacttcggaaaggtcattggttgatttggcatgcggtggtatggacgatttggaaggcgcggaat |
3678415 |
T |
|
| Q |
236 |
gataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gggaattgggccaattctagacttaggagtcctc |
333 |
Q |
| |
|
|||||||| || || ||| | || ||||||||||||||||| || ||||| ||||||||||||| ||||||||| | | ||||||||| |||||||| |
|
|
| T |
3678414 |
gataggattttcaaaaatttatcgaaggattttggtgaaattgttgaggagattaaggtgatttcgtggaattgggtgattactagacttaagagtcctc |
3678315 |
T |
|
| Q |
334 |
catgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg |
420 |
Q |
| |
|
| |||||||||||| ||| ||| |||||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
3678314 |
cttgcctctattacaagttgtgttggaaccccatcgaatgcttattaagata--ggtgggcagttttagaggtgtcctggacttttg |
3678230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 26 - 415
Target Start/End: Complemental strand, 2756690 - 2756301
Alignment:
| Q |
26 |
gaaacagcggctcatctctttcttcattgtgagtggatgtttaaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacctcaatccc |
125 |
Q |
| |
|
||||||||||||||||| || || |||||| | | ||| || ||||||||| ||| ||| ||||||| |||| ||| ||||| |||||||||||||| | |
|
|
| T |
2756690 |
gaaacagcggctcatcttttcctacattgtcatttgatattcaaagtgtgggcgatggtgtgtggttggttggagattaattttattacacctcaatctc |
2756591 |
T |
|
| Q |
126 |
tttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcgatttggaa |
225 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| | || ||| | ||||| ||||| || ||||||| | | |||||| |||||||||| |
|
|
| T |
2756590 |
-gtttcaacattttgaatgttggagtggggagattgggaagaaaaaactttgtaaaggaaattggatggtttggcattcaatcttatggacgatttggaa |
2756492 |
T |
|
| Q |
226 |
agcgagaaatgataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gggaattgggccaattctagactt |
323 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || || |||| ||||||||| || || || ||||||||| ||| |||||||| ||||||||| |
|
|
| T |
2756491 |
agcgagaaatgataggatttttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgtggaattggatggtttctagacta |
2756392 |
T |
|
| Q |
324 |
aggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggac |
415 |
Q |
| |
|
| ||| ||||| ||||| |||||||||||||| |||||||||||| |||| ||| | |||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
2756391 |
aagaggcctccgtgcctttattacgagtggtgttggaaccccaagaaatgtttactgagat-agttggggtagttttagaggcgtccgggac |
2756301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 104 - 418
Target Start/End: Complemental strand, 42629309 - 42628995
Alignment:
| Q |
104 |
aatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacg |
203 |
Q |
| |
|
||||| |||||||||| ||| || |||||||||||||| ||||||| |||||||| |||| | |||||| | ||||| |||||| |||||||||| | |
|
|
| T |
42629309 |
aattttattacacctcgatctctgtttcaacattttgaatgttggagtggggagaccgggaagaaaaagctttgtaaaggatattggatgatttggcatg |
42629210 |
T |
|
| Q |
204 |
cggtgttatggtcgatttggaaagcgagaaatgataggatctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gg |
301 |
Q |
| |
|
|||| |||||| | |||||||||| ||||||||||||||| |||| ||| || || || ||||||||||| || || || |||| |||| ||| | |
|
|
| T |
42629209 |
cggtattatggac-atttggaaagtgagaaatgataggatttttagtaatcttgtgaaagaatttggtgaaattgttgatgaaattatggtgctttcgtg |
42629111 |
T |
|
| Q |
302 |
gaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagtttta |
401 |
Q |
| |
|
||||||||| | ||||||| | |||||||| ||||||||||| |||||||| |||||||||||||||| | | |||| | ||||| ||||||| |
|
|
| T |
42629110 |
gaattgggcggttactagactgaaaagtcctccctgcctctattatgagtggtgtcggaaccccaaggaatgtcttctgagat-agttggggtagtttta |
42629012 |
T |
|
| Q |
402 |
gaggtgtccgggacttt |
418 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
42629011 |
gaggcgtccgggacttt |
42628995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 3761307 - 3761247
Alignment:
| Q |
104 |
aatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattggga |
164 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
3761307 |
aattttattacacctcaatctttgtttcaacattttgaatgttggagtggggagattggga |
3761247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 420
Target Start/End: Complemental strand, 3761102 - 3761009
Alignment:
| Q |
326 |
gagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg |
420 |
Q |
| |
|
|||| |||| ||||||||||||||||| || | ||||||||||||||| ||| | | ||| | ||||| |||||||||||||| |||||||||| |
|
|
| T |
3761102 |
gagttctccctgcctctattacgagtgctgtttgaaccccaaggaatgtttactgatatagc-tggggtagttttagaggtgtttgggacttttg |
3761009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 4e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 44 - 417
Target Start/End: Original strand, 42202421 - 42202795
Alignment:
| Q |
44 |
tttcttcattgtgagtggatgtttaaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacctcaatccctttttcaacattttgagt |
143 |
Q |
| |
|
||||| |||||||| |||| ||||| || ||||||||||| ||| | || ||||| ||||||||||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
42202421 |
tttctccattgtgactggacttttaatgtatggtcgaaggttggtaggtggttgggaataaatttcattacaccgcaatctctttttcaacattttgaat |
42202520 |
T |
|
| Q |
144 |
gttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcgatttggaaagcgagaaatgataggat |
243 |
Q |
| |
|
||||||||||||| ||||||||| | || ||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
42202521 |
gttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaagcccggaatgataggat |
42202620 |
T |
|
| Q |
244 |
ctttaacaatatttccaaggattttggtgaaatggtggaggatattaaggtgattt--gggaattgggccaattctagacttaggagtcctccatgcctc |
341 |
Q |
| |
|
|| || ||| | ||||||| ||||||||| || ||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
42202621 |
tttcaataatttaatgaaggattatggtgaaatagttgaggaaattaaggtgattttgtggaattgggtgaattctagacttaagagtcctccttgcctc |
42202720 |
T |
|
| Q |
342 |
tattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggactt |
417 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||| |||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
42202721 |
tattacgagtggtgttggaaccctatcgaatgcttattgagat-agatggggcagttttagaggtgtctgggactt |
42202795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 68 - 420
Target Start/End: Original strand, 44684227 - 44684580
Alignment:
| Q |
68 |
aaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggc |
167 |
Q |
| |
|
||||||||||||| |||| || | || |||||||| ||||| ||||| |||||| | || || ||||||||||||||||||| |||||||| |||||| | |
|
|
| T |
44684227 |
aaagtgtggtcgatggtatgttgctggttggggattaattttattactcctcaaacgctcttccaacattttgagtgttggagtggggagactgggagac |
44684326 |
T |
|
| Q |
168 |
gtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcgatttggaaagcgagaaatgataggatctttaacaatatttccaaggattt |
267 |
Q |
| |
|
||||| || |||||||||||| |||||||||| || || | ||| |||| |||||| |||| ||||||||||| ||||| |||| || ||| |
|
|
| T |
44684327 |
taaagctccgtaaaggttattggatgatttggcatgcagttctctggacgatctggaaaacgaggaatgataggatttttaattctattgtgaaagatca |
44684426 |
T |
|
| Q |
268 |
tggtgaaatggtggaggatattaaggtg--atttgggaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaacccc |
365 |
Q |
| |
|
||| ||||| || || || ||||||||| | | |||||||||| | | | | ||||| ||||||||| ||||||| ||| |||||||| ||||||||| |
|
|
| T |
44684427 |
tggggaaattgttgatgacattaaggtgctctcttggaattgggcgattacaaaacttaagagtcctccctgcctcttttatgagtggtgttggaacccc |
44684526 |
T |
|
| Q |
366 |
aaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg |
420 |
Q |
| |
|
||||||||||| | || | |||||| ||||||||||||||| |||||||||| |
|
|
| T |
44684527 |
aaggaatgcttgctccga-caggtggggtagttttagaggtgtctgggacttttg |
44684580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 327 - 406
Target Start/End: Complemental strand, 25967913 - 25967835
Alignment:
| Q |
327 |
agtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggt |
406 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||||| || || || |||||||| || ||||||||||||||||| |
|
|
| T |
25967913 |
agtcctccttgcctcttttacgagtggagctggaaccccaaagagtgtttgttaagatagcg-ggggcagttttagaggt |
25967835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 68 - 420
Target Start/End: Original strand, 934 - 1287
Alignment:
| Q |
68 |
aaagtgtggtcgaaggtaggtggttgcttggggataaatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggc |
167 |
Q |
| |
|
||||||||||||| |||| || | || |||||||| ||||| | ||| |||||| | || || ||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
934 |
aaagtgtggtcgatggtatgttgctgtttggggattaattttaatactcctcaaacgctcttccaacattttgagtgttggagtggggagattgggagac |
1033 |
T |
|
| Q |
168 |
gtaagcttcggaaaggttattggttgatttggcacgcggtgttatggtcgatttggaaagcgagaaatgataggatctttaacaatatttccaaggattt |
267 |
Q |
| |
|
||||| || |||||||||||| |||||||||| ||||| | ||| |||| |||||| |||| ||||||||||| ||||| |||| || |||| |
|
|
| T |
1034 |
taaagctccgtaaaggttattggatgatttggcatgcggttctttggacgatctggaaaacgaggaatgataggatttttaattctattgtgaaagatta |
1133 |
T |
|
| Q |
268 |
tggtgaaatggtggaggatattaaggtgat--ttgggaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaacccc |
365 |
Q |
| |
|
||| ||||| || || || ||||||||| | | |||||||||| | | | ||||||| ||||||||| ||||||| ||| |||||||| ||||| ||| |
|
|
| T |
1134 |
tggggaaattgttgatgacattaaggtgctcccttggaattgggcgattacaagacttaagagtcctccctgcctcttttatgagtggtgttggaagccc |
1233 |
T |
|
| Q |
366 |
aaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg |
420 |
Q |
| |
|
||||||||||| | || | |||||| |||||||||||||||||||||||||| |
|
|
| T |
1234 |
aaggaatgcttgctccga-caggtggggtagttttagaggtgtccgggacttttg |
1287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 51361293 - 51361381
Alignment:
| Q |
331 |
ctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg |
420 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||||||| |||| |||| | ||||| ||||||||||||||| |||||||||| |
|
|
| T |
51361293 |
ctccctgcctctattatgagtggtgttggaaccccaaggaatgcctattgagat-agttggggtagttttagaggtgtcagggacttttg |
51361381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 48157382 - 48157426
Alignment:
| Q |
342 |
tattacgagtggtgctggaaccccaaggaatgcttattaagataa |
386 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||| ||||||| |
|
|
| T |
48157382 |
tattacgagtggtgctggaactcaaaggaatgtttatcaagataa |
48157426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 13154799 - 13154948
Alignment:
| Q |
104 |
aatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacg |
203 |
Q |
| |
|
||||| ||||| |||||||| | |||||||||||||| ||||||| ||||||||||||| | | |||| | ||||| |||||| || ||||||| | |
|
|
| T |
13154799 |
aattttattactcctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggcatg |
13154898 |
T |
|
| Q |
204 |
cggtgttatggtcgatttggaaagcgagaaatgataggatctttaacaat |
253 |
Q |
| |
|
| || ||||| |||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
13154899 |
ctgtcctatggacgatttggaaagcgccaaacgataggatttttaacaat |
13154948 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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