View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_low_31 (Length: 236)
Name: NF12077_low_31
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15161169 - 15160936
Alignment:
| Q |
1 |
aattgtatggtcttattcttatatacaacaaaatatttgcaatttactttttgacaatgtagtttgttcagaggcataaacaaggtgcttccaataagtt |
100 |
Q |
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| T |
15161169 |
aattgtatggtcttattct-atatacaacaaa-tatttgcaatttactttttgacaatgtagtttgttcagaggcataaacatggtgcttcccataagtt |
15161072 |
T |
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| Q |
101 |
gtttaatgtcaagcttattttgaattgtttctgcttctttagcttgattgatgataatataaattgatttaggtcagagttgatatagggaaaccgatta |
200 |
Q |
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| T |
15161071 |
gtttaatgtcaagcttattttgtattgtttctgcttctttagcttgattgatgataatataaattgatttaggtcagagttgatatagggaaaccgatta |
15160972 |
T |
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| Q |
201 |
aggcatcagatgtgcgtgagtctctccctataaatc |
236 |
Q |
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| T |
15160971 |
aggcatcagatgtgcgtgagtctctccctagaaatc |
15160936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 40249985 - 40249924
Alignment:
| Q |
135 |
ttctttagcttgattgatgataatataaattgatttaggtcagagttgatatagggaaaccg |
196 |
Q |
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| T |
40249985 |
ttctttagcttgattgatgataatactaattgatttaggtcagagttgatatgggggaaccg |
40249924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 40250147 - 40250097
Alignment:
| Q |
4 |
tgtatggtcttattcttatatacaacaaaatatttgcaatttactttttgac |
55 |
Q |
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| T |
40250147 |
tgtatgttcttattcttatatgcagcaaa-tatttgcaatttactttttgac |
40250097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 26880403 - 26880363
Alignment:
| Q |
129 |
ttctgcttctttagcttgattgatgataatataaattgatt |
169 |
Q |
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| T |
26880403 |
ttctacttctttagcttgatggatgataatacaaattgatt |
26880363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 32266289 - 32266233
Alignment:
| Q |
118 |
ttttgaattgtttctgcttctttagcttgattgatgataatataaattgatttaggt |
174 |
Q |
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| T |
32266289 |
ttttgtattgtttctggttctttagcttgattgatgataatataaattaattaaggt |
32266233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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