View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_low_34 (Length: 208)
Name: NF12077_low_34
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 34923107 - 34922933
Alignment:
| Q |
16 |
acagaagaatagaaattgaaagaactatgatgatatcaagtttctatgacgatatcaagtttggtatatggcatgattatcttgaacacaaaggcatggc |
115 |
Q |
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| T |
34923107 |
acagaagaatagaaattgaaagaactatgatgatatcaagtttctatgacgatatcaagtttggtatatggcatgattatcttgaacacaaaggcatggc |
34923008 |
T |
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| Q |
116 |
aagcgacgttgaatgacatgattaagaaaagaaggtagaattgcaaacctcacgaatacaatttgcctccttgat |
190 |
Q |
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| T |
34923007 |
aagcgacgttgaatgacatgattaagaaaagaaggtagaattgcaaacctcactaatacaatttgcctccttgat |
34922933 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 34683358 - 34683319
Alignment:
| Q |
77 |
tggtatatggcatgattatcttgaacacaaaggcatggca |
116 |
Q |
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| T |
34683358 |
tggtatatgacatgattatcttgaacactaaggcatggca |
34683319 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 26382279 - 26382228
Alignment:
| Q |
139 |
aagaaaagaaggtagaattgcaaacctcacgaatacaatttgcctccttgat |
190 |
Q |
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| T |
26382279 |
aagaaaaccaggtagaattgcagacctcaccaatgcaatttgcctccttgat |
26382228 |
T |
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