View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12077_low_35 (Length: 204)

Name: NF12077_low_35
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12077_low_35
NF12077_low_35
[»] chr5 (4 HSPs)
chr5 (20-191)||(2998252-2998423)
chr5 (29-189)||(2998461-2998621)
chr5 (20-190)||(2997840-2998010)
chr5 (41-187)||(2998050-2998196)
[»] chr2 (6 HSPs)
chr2 (29-190)||(32716743-32716904)
chr2 (23-190)||(32716536-32716703)
chr2 (29-182)||(32717165-32717318)
chr2 (29-189)||(32716951-32717111)
chr2 (107-189)||(32717365-32717447)
chr2 (146-190)||(32714122-32714166)
[»] chr6 (5 HSPs)
chr6 (29-186)||(14904816-14904973)
chr6 (29-190)||(14905437-14905598)
chr6 (29-188)||(14905023-14905182)
chr6 (32-118)||(14905233-14905319)
chr6 (101-167)||(14903953-14904017)
[»] chr8 (1 HSPs)
chr8 (32-89)||(38454191-38454248)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 2998423 - 2998252
Alignment:
Q  20 ttgaccacatgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacg 119  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  2998423 ttgaccacatgtactttccgttgccatggaaaagatcgttatcgaagttaccaacgtagatatccccatcggattttgtcagggtgtcgtgactatgacg 2998324  T
Q  120 ggaattcatggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtcctttg 191  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2998323 ggaattcatggagaattcaccctcaaaacttgttcctgatggatatatgatccgtcctttccctgtcctttg 2998252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 2998621 - 2998461
Alignment:
Q  29 tgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacgggaattcat 128  Q
    |||||||||| |||||||| |||| ||| || | |||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||| |    
T  2998621 tgtactttcccttgccatgaaaaatatcattctcgaagttaccaacgtagatatccccattggattttgtaagggtgccgcgaccatgacgggagttctt 2998522  T
Q  129 ggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtcctt 189  Q
    ||||||||||||||||||| ||| || ||||| |||||||||||| |||||||||||||||    
T  2998521 ggagaattcaccctcaaaaattgatcctgatgaatatatgatccgacctttccctgtcctt 2998461  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 2998010 - 2997840
Alignment:
Q  20 ttgaccacatgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacg 119  Q
    |||||||  |||||||||| ||||||||||||||||| || |  |||||||||| | ||| |||||||||||||||||| || ||| | |||||||||||    
T  2998010 ttgaccatgtgtactttcccttgccatggaaaagatcattttcaaagttaccaatgaagacatccccattggattttgtaagagtgccatgaccatgacg 2997911  T
Q  120 ggaattcatggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtccttt 190  Q
     |||||| |  ||||||||||||||||||||| |||||| |||| ||||| | |||||||||| |||||||    
T  2997910 agaattcctaaagaattcaccctcaaaacttgctcttgacggatttatgaccggtcctttcccagtccttt 2997840  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 2998196 - 2998050
Alignment:
Q  41 tgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacgggaattcatggagaattcacc 140  Q
    |||||||||||| || ||| |  |||||||||| ||||||||||||||  |||||| | |||||| ||| ||||| |||||||||  | |||||||||||    
T  2998196 tgccatggaaaatattgttctcaaagttaccaatgtagatatccccatcagattttttaagggtgccgtaaccattacgggaatttctcgagaattcacc 2998097  T
Q  141 ctcaaaacttgttcttgatggatatatgatccgtcctttccctgtcc 187  Q
    ||||||| ||||| || |||||||||| || ||||||||||||||||    
T  2998096 ctcaaaaattgttttttatggatatattattcgtcctttccctgtcc 2998050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 32716904 - 32716743
Alignment:
Q  29 tgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacgggaattcat 128  Q
    |||||||||| |||||||||||||||||  | | ||||||||||||||||||| |||||| ||||||| | || ||| |||||||||||||||||||| |    
T  32716904 tgtactttcctttgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgtgaccatgacgggaattcct 32716805  T
Q  129 ggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtccttt 190  Q
      |||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||    
T  32716804 aaagaattgaccctcaaaacttgctcctgatggatatatgatccgccctttccctgtccttt 32716743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 32716703 - 32716536
Alignment:
Q  23 accacatgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacggga 122  Q
    ||||| |||||||||| |||||||||||||||||  | | ||||||||||||||||||| |||||| ||||||| | || ||| || |||||||||||||    
T  32716703 accacgtgtactttcccttgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgcgaccatgacggga 32716604  T
Q  123 attcatggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtccttt 190  Q
    |||| |  |||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||    
T  32716603 attcctaaagaattgaccctcaaaacttgctcctgatggatatatgatccgccctttccctgtccttt 32716536  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 32717318 - 32717165
Alignment:
Q  29 tgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacgggaattcat 128  Q
    |||||||||| ||||||||| |||||||  | | ||||||||||| ||||||||||||||  |||||| | |||||| ||||||||||||||||||||      
T  32717318 tgtactttcctttgccatggtaaagatcactctcgaagttaccaatgtagatatccccatcagattttttaagggtgccgtgaccatgacgggaattccc 32717219  T
Q  129 ggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccc 182  Q
    ||||||||||||||||||| ||| || |||||||||||||||| | ||||||||    
T  32717218 ggagaattcaccctcaaaagttgatcctgatggatatatgatctgacctttccc 32717165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 32717111 - 32716951
Alignment:
Q  29 tgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacgggaattcat 128  Q
    |||||||||| ||||||| |||||||||  | ||||||||||||| ||||| || |||||||||| | || |||||| | |||||||||||||||||| |    
T  32717111 tgtactttcccttgccattgaaaagatcactcttgaagttaccaatgtagacatgcccattggatatggtaagggtgccttgaccatgacgggaattcct 32717012  T
Q  129 ggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtcctt 189  Q
      |||||| ||||||||||||||||| |||| ||||||| ||  | |||||||||||||||    
T  32717011 aaagaattgaccctcaaaacttgttcctgatagatatatcatttgccctttccctgtcctt 32716951  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 32717447 - 32717365
Alignment:
Q  107 cgtgaccatgacgggaattcatggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtcctt 189  Q
    |||||||||||  ||||||| | |||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||    
T  32717447 cgtgaccatgaaaggaattcctagagaattcaccctcaaaacttgctcctgatggatatattatccgtcctttccctgtcctt 32717365  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 32714166 - 32714122
Alignment:
Q  146 aacttgttcttgatggatatatgatccgtcctttccctgtccttt 190  Q
    |||||| || |||||||||||||||||| ||||||||||||||||    
T  32714166 aacttgctcctgatggatatatgatccgccctttccctgtccttt 32714122  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 14904816 - 14904973
Alignment:
Q  29 tgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacgggaattcat 128  Q
    |||| ||||| ||||||||||||||||| || ||||||||||||| ||||| |||||| ||||||||| | |||||||||||||||||||| ||||   |    
T  14904816 tgtattttcctttgccatggaaaagatcattcttgaagttaccaatgtagacatccccgttggattttataagggtgtcgtgaccatgacgagaatcttt 14904915  T
Q  129 ggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtc 186  Q
      ||||||||||||||||||||  || ||||||| |||| ||||| ||||||||||||    
T  14904916 aaagaattcaccctcaaaactttctcctgatggaaatatcatccgccctttccctgtc 14904973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 14905437 - 14905598
Alignment:
Q  29 tgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacgggaattcat 128  Q
    |||||||||| ||||||||||||  | |  | ||||||||||||| ||||| || ||| ||||||||||| |||||| | |||||||||||||||||| |    
T  14905437 tgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgccttgaccatgacgggaattcct 14905536  T
Q  129 ggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtccttt 190  Q
      ||||||||||||||||||||| || |||||||||||| ||||| |||||||| |||||||    
T  14905537 aaagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtccttt 14905598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 14905023 - 14905182
Alignment:
Q  29 tgtactttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgacgggaattcat 128  Q
    |||||||||| ||||||||||||||| | || |  ||||||||||  |||| |||||| |||||| |||| ||||||||||| ||||||| |   |||||    
T  14905023 tgtactttcccttgccatggaaaagaccattctcaaagttaccaatatagagatccccgttggatcttgtaagggtgtcgtgtccatgactgatgttcat 14905122  T
Q  129 ggagaattcaccctcaaaacttgttcttgatggatatatgatccgtcctttccctgtcct 188  Q
     |||||| ||||||||||||||| |  ||||||| | || || |||||||||||||||||    
T  14905123 tgagaatccaccctcaaaacttgcttctgatggaaagatcattcgtcctttccctgtcct 14905182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 14905233 - 14905319
Alignment:
Q  32 actttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccattggattttgtcagggtgtcgtgaccatgac 118  Q
    ||||||| ||||||||||||||||  || | ||||||||||||||||| |||||||||||| | ||| | |||| ||||||||||||    
T  14905233 actttcccttgccatggaaaagattattctcgaagttaccaacgtagacatccccattggaatgtgtaaaggtgccgtgaccatgac 14905319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 14903953 - 14904017
Alignment:
Q  101 gggtgtcgtgaccatgacgggaattcatggagaattcaccctcaaaacttgttcttgatggatatat 167  Q
    ||||||||||||| |||  ||||||||| |||  |||||||||||||||||||| | ||||||||||    
T  14903953 gggtgtcgtgaccttgaaaggaattcatagag--ttcaccctcaaaacttgttcctaatggatatat 14904017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 38454191 - 38454248
Alignment:
Q  32 actttccgttgccatggaaaagatcgttgttgaagttaccaacgtagatatccccatt 89  Q
    |||||||||||||||| ||||| || |  ||||||||||||||||||| |||||||||    
T  38454191 actttccgttgccatgaaaaagttcatccttgaagttaccaacgtagacatccccatt 38454248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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