View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12077_low_4 (Length: 606)

Name: NF12077_low_4
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12077_low_4
NF12077_low_4
[»] chr5 (6 HSPs)
chr5 (394-588)||(36955762-36955956)
chr5 (133-211)||(36955558-36955636)
chr5 (240-281)||(36955666-36955707)
chr5 (242-281)||(34764015-34764054)
chr5 (133-169)||(31193966-31194002)
chr5 (133-169)||(31194229-31194265)
[»] chr8 (3 HSPs)
chr8 (117-169)||(31547581-31547633)
chr8 (242-281)||(33368121-33368160)
chr8 (133-177)||(6911302-6911346)
[»] chr4 (2 HSPs)
chr4 (117-169)||(26297324-26297376)
chr4 (133-169)||(9551489-9551525)
[»] chr2 (6 HSPs)
chr2 (117-169)||(33491330-33491382)
chr2 (242-281)||(11741290-11741329)
chr2 (117-163)||(8237860-8237906)
chr2 (394-459)||(12493893-12493958)
chr2 (133-169)||(4371455-4371491)
chr2 (133-169)||(22563211-22563247)
[»] chr1 (3 HSPs)
chr1 (123-167)||(13946934-13946978)
chr1 (242-281)||(13021046-13021085)
chr1 (137-169)||(34622593-34622625)
[»] scaffold0311 (1 HSPs)
scaffold0311 (242-281)||(9267-9306)
[»] chr3 (4 HSPs)
chr3 (242-281)||(53881218-53881257)
chr3 (123-169)||(46883425-46883471)
chr3 (133-169)||(38499820-38499856)
chr3 (133-169)||(38500085-38500121)
[»] chr7 (2 HSPs)
chr7 (133-169)||(19318483-19318519)
chr7 (133-169)||(25048288-25048324)
[»] chr6 (1 HSPs)
chr6 (117-169)||(33277316-33277368)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 394 - 588
Target Start/End: Original strand, 36955762 - 36955956
Alignment:
Q  394 aatgacacatagatgtattaatgtttgcaacttctcacatggactacacttaaatctgctggtgcaaagcgacatcctagaaaagtactagcacttcata 493  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  36955762 aatgacacatagatgtattaatgtttgcagcttctcacatggactgcacttaaatctgctggtgcaaagcgaagttctagaaaagtactagcacttcata 36955861  T
Q  494 ttgaatccaaaccaagcaattcaaattcatcagaaacagaatcaaataaagaccaaaatgaagacaatgctgaagcatctcaacaaagtgaaaca 588  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  36955862 ttgaatccaaaccaagcgattcaaattcatcaaaaatagaatcagatatagaccaaaatgaagacaatgttgaagcatctcaacaaagtgaaaca 36955956  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 36955558 - 36955636
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaacttaatgaaaagagtgaatgttcagtgtctttttaaattttgag 211  Q
    ||||| |||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  36955558 taaatagagcttagcctaaatggagcgtacccaaactcaatgaaaagagtgaattttcagtgtctttttaaattttgag 36955636  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 36955666 - 36955707
Alignment:
Q  240 agcttttggcagttttcgtatttcagtttttaaaacaataaa 281  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  36955666 agcttttggcagttttcatatttcagtttttaaaataataaa 36955707  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 34764054 - 34764015
Alignment:
Q  242 cttttggcagttttcgtatttcagtttttaaaacaataaa 281  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  34764054 cttttggcagtttccgtttttcagtttttaaaacaataaa 34764015  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 31194002 - 31193966
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  31194002 taaatggagcttagcctaaatggagcatacccgaact 31193966  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 31194229 - 31194265
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  31194229 taaatggagcttagcctaaatggagcatacccgaact 31194265  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 31547633 - 31547581
Alignment:
Q  117 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||  ||||||||||||||||||||||||||| || |||||||    
T  31547633 tcttgaatccaaactctaaatggagcttagtctaaatggagcatatccgaact 31547581  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 33368160 - 33368121
Alignment:
Q  242 cttttggcagttttcgtatttcagtttttaaaacaataaa 281  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  33368160 cttttggcagttttcgtttttcagtttttaaaacaataaa 33368121  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 6911302 - 6911346
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaacttaatgaaa 177  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||    
T  6911302 taaatggagcttagcctaaattgagcgtacccgaactcaatgaaa 6911346  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 26297376 - 26297324
Alignment:
Q  117 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 169  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| ||||| ||||    
T  26297376 tcttgcatccaaaccctaaatggagcttagcctaaatggagcatacccaaact 26297324  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 9551489 - 9551525
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaact 169  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  9551489 taaatggagtttagtctaaatggagcatacccgaact 9551525  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 33491382 - 33491330
Alignment:
Q  117 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 169  Q
    ||||| ||||||| |||||||||||||||| ||||||||| | ||||||||||    
T  33491382 tcttgcatccaaaccctaaatggagcttagcctaaatggaacatacccgaact 33491330  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 11741329 - 11741290
Alignment:
Q  242 cttttggcagttttcgtatttcagtttttaaaacaataaa 281  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  11741329 cttttggcagtttccgtttttcagtttttaaaacaataaa 11741290  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 8237906 - 8237860
Alignment:
Q  117 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacc 163  Q
    ||||| |||| ||||||||||||||||||| ||||||||||| ||||    
T  8237906 tcttgcatcctaatcctaaatggagcttagcctaaatggagcatacc 8237860  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 459
Target Start/End: Complemental strand, 12493958 - 12493893
Alignment:
Q  394 aatgacacatagatgtattaatgtttgcaacttctcacatggactacacttaaatctgctggtgca 459  Q
    |||||||||||| | ||  |||||||||| | ||| ||||||| | ||||||||||||||||||||    
T  12493958 aatgacacatagctttaacaatgtttgcagcatcttacatggattgcacttaaatctgctggtgca 12493893  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 4371491 - 4371455
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  4371491 taaatggagcttagcctaaatggagcatacccgaact 4371455  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 22563247 - 22563211
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  22563247 taaatggagcttagcctaaatggagcatacccgaact 22563211  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 13946978 - 13946934
Alignment:
Q  123 atccaaatcctaaatggagcttagtctaaatggagcgtacccgaa 167  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||||    
T  13946978 atccaaaccctaaatggagcttagcctaaatggagcatacccgaa 13946934  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Original strand, 13021046 - 13021085
Alignment:
Q  242 cttttggcagttttcgtatttcagtttttaaaacaataaa 281  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  13021046 cttttggcagtttccgtttttcagtttttaaaacaataaa 13021085  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 34622593 - 34622625
Alignment:
Q  137 tggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||||||||||| ||||||||||    
T  34622593 tggagcttagtctaaatggagcatacccgaact 34622625  T

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Target: scaffold0311 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 9306 - 9267
Alignment:
Q  242 cttttggcagttttcgtatttcagtttttaaaacaataaa 281  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  9306 cttttggcagtttccgtttttcagtttttaaaacaataaa 9267  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 53881257 - 53881218
Alignment:
Q  242 cttttggcagttttcgtatttcagtttttaaaacaataaa 281  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  53881257 cttttggcagtttccgtttttcagtttttaaaacaataaa 53881218  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 46883471 - 46883425
Alignment:
Q  123 atccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 169  Q
    ||||||| ||||||||||| |||| ||||||||||| ||||||||||    
T  46883471 atccaaaccctaaatggagtttagcctaaatggagcatacccgaact 46883425  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 38499856 - 38499820
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  38499856 taaatggagcttagcctaaatggagcatacccgaact 38499820  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 38500085 - 38500121
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  38500085 taaatggagcttagcctaaatggagcatacccgaact 38500121  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 19318483 - 19318519
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  19318483 taaatggagcttagcctaaatggagcatacccgaact 19318519  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 25048288 - 25048324
Alignment:
Q  133 taaatggagcttagtctaaatggagcgtacccgaact 169  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  25048288 taaatggagcttagcctaaatggagcatacccgaact 25048324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 33277368 - 33277316
Alignment:
Q  117 tcttgaatccaaatcctaaatggagcttagtctaaatggagcgtacccgaact 169  Q
    ||||| ||||||| |||||||| || |||| ||||||||||| ||||||||||    
T  33277368 tcttgcatccaaaccctaaatgaagtttagcctaaatggagcatacccgaact 33277316  T

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