View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12077_low_7 (Length: 460)

Name: NF12077_low_7
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12077_low_7
NF12077_low_7
[»] chr5 (6 HSPs)
chr5 (36-341)||(2997705-2998010)
chr5 (36-263)||(2998196-2998423)
chr5 (36-276)||(2997977-2998216)
chr5 (41-276)||(2998390-2998625)
chr5 (368-418)||(2997642-2997692)
chr5 (223-275)||(2998598-2998650)
[»] chr2 (7 HSPs)
chr2 (39-314)||(32716428-32716703)
chr2 (37-276)||(32716673-32716912)
chr2 (39-312)||(32717051-32717324)
chr2 (40-276)||(32716880-32717116)
chr2 (21-311)||(32717259-32717549)
chr2 (162-314)||(32714014-32714166)
chr2 (322-360)||(25842120-25842158)
[»] chr6 (5 HSPs)
chr6 (38-276)||(14904809-14905047)
chr6 (37-231)||(14905429-14905623)
chr6 (37-312)||(14905015-14905290)
chr6 (37-134)||(14905222-14905319)
chr6 (193-309)||(14904757-14904873)
[»] chr8 (14 HSPs)
chr8 (191-314)||(34916661-34916784)
chr8 (192-309)||(34534099-34534216)
chr8 (208-314)||(38454144-38454250)
chr8 (191-300)||(34544941-34545050)
chr8 (223-314)||(38453535-38453626)
chr8 (40-105)||(34916717-34916782)
chr8 (37-105)||(38454180-38454248)
chr8 (214-309)||(39848853-39848948)
chr8 (214-304)||(38632290-38632380)
chr8 (37-102)||(34534151-34534216)
chr8 (190-271)||(39848030-39848111)
chr8 (189-253)||(34548864-34548928)
chr8 (84-160)||(34548966-34549042)
chr8 (128-160)||(38632427-38632459)
[»] chr3 (1 HSPs)
chr3 (217-314)||(7046911-7047008)
[»] chr4 (1 HSPs)
chr4 (233-314)||(44474714-44474795)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 36 - 341
Target Start/End: Complemental strand, 2998010 - 2997705
Alignment:
Q  36 ttgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2998010 ttgaccatgtgtactttcccttgccatggaaaagatcattttcaaagttaccaatgaagacatccccattggattttgtaagagtgccatgaccatgacg 2997911  T
Q  136 agaattcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagatt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2997910 agaattcctaaagaattcaccctcaaaacttgctcttgacggatttatgaccggtcctttcccagtccttttttcattaacccaatcaccctcatagatt 2997811  T
Q  236 gttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatccccatttggaagatacaaataaaggggta 335  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2997810 gttccacttgaccatgtgtactttcccttgccatgaaaaaattttcccttaaaattaccaatgtagacatgcccatttggaagatacaaataaaggggta 2997711  T
Q  336 aaattg 341  Q
    ||||||    
T  2997710 aaattg 2997705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 2998423 - 2998196
Alignment:
Q  36 ttgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacg 135  Q
    |||||||  |||||||||| ||||||||||||||||| || ||||||||||||| ||||| |||||||| ||||||||| || ||| | |||| ||||||    
T  2998423 ttgaccacatgtactttccgttgccatggaaaagatcgttatcgaagttaccaacgtagatatccccatcggattttgtcagggtgtcgtgactatgacg 2998324  T
Q  136 agaattcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagatt 235  Q
     |||||| |  ||||||||||||||||||||| || ||| |||| ||||  | |||||||||| ||||||| | ||| |||||||||||||||||| |||    
T  2998323 ggaattcatggagaattcaccctcaaaacttgttcctgatggatatatgatccgtcctttccctgtcctttgttcatcaacccaatcaccctcatatatt 2998224  T
Q  236 gttccacttgaccatgtgtattttccct 263  Q
    |||||| ||||||||||||  |||||||    
T  2998223 gttccatttgaccatgtgtgctttccct 2998196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 36 - 276
Target Start/End: Complemental strand, 2998216 - 2997977
Alignment:
Q  36 ttgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacg 135  Q
    |||||||||||| |||||||| ||||||||||| ||  || || |||||||||||||||| ||||||||  |||||| |||| ||||| | ||||| |||    
T  2998216 ttgaccatgtgtgctttccct-gccatggaaaatattgttctcaaagttaccaatgtagatatccccatcagattttttaagggtgccgtaaccattacg 2998118  T
Q  136 agaattcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagatt 235  Q
     ||||| ||  ||||||||||||||||| ||| | || | |||| |||     |||||||||| |||| | |||||| |||||||||||||||||| |||    
T  2998117 ggaatttctcgagaattcaccctcaaaaattgttttttatggatatattattcgtcctttccctgtccgtcttccatcaacccaatcaccctcatatatt 2998018  T
Q  236 gttccacttgaccatgtgtattttcccttgccatgaaaaag 276  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  2998017 gttccacttgaccatgtgtactttcccttgccatggaaaag 2997977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 41 - 276
Target Start/End: Complemental strand, 2998625 - 2998390
Alignment:
Q  41 catgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacgagaat 140  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||| ||||||||||||||||||||| |||||  |||||||||| || |    
T  2998625 catgtgtactttcccttgccatgaaaaatatcattctcgaagttaccaacgtagatatccccattggattttgtaagggtgccgcgaccatgacgggagt 2998526  T
Q  141 tcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagattgttcc 240  Q
    || |  ||||||||||||||||| ||| || ||| | || ||||  | | |||||||| |||||| |||||| || |||| ||||||  || ||||||||    
T  2998525 tcttggagaattcaccctcaaaaattgatcctgatgaatatatgatccgacctttccctgtccttcttccatcaaaccaaccacccttgtatattgttcc 2998426  T
Q  241 acttgaccatgtgtattttcccttgccatgaaaaag 276  Q
    | |||||||  |||| ||||| |||||||| |||||    
T  2998425 atttgaccacatgtactttccgttgccatggaaaag 2998390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 2997692 - 2997642
Alignment:
Q  368 ttaattccttcatatattggtataaataaaacagaaaaaatctttcattaa 418  Q
    ||||||||||| |||||||||||||||||||| |||||||  |||||||||    
T  2997692 ttaattccttcgtatattggtataaataaaacggaaaaaaaatttcattaa 2997642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 2998650 - 2998598
Alignment:
Q  223 accctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaa 275  Q
    ||||||||| ||||||| | || | |||||||| |||||||||||||||||||    
T  2998650 accctcatatattgttctatttaaacatgtgtactttcccttgccatgaaaaa 2998598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 39 - 314
Target Start/End: Complemental strand, 32716703 - 32716428
Alignment:
Q  39 accatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacgaga 138  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||||||| ||||| | |||||| ||||||| ||||||||||  |||||||||| ||    
T  32716703 accacgtgtactttcccttgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgcgaccatgacggga 32716604  T
Q  139 attcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagattgtt 238  Q
    |||||||||||||| ||||||||||||||||| ||| |||| ||||  | | |||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  32716603 attcctaaagaattgaccctcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgtt 32716504  T
Q  239 ccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatccccatttg 314  Q
    ||| ||||||||||||| ||||||||||||||   | |||||||||||| |  |||||||||||||||||||||||    
T  32716503 ccatttgaccatgtgtactttcccttgccatgcttacgttttcccttgacaaaaccaatgtagacatccccatttg 32716428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 37 - 276
Target Start/End: Complemental strand, 32716912 - 32716673
Alignment:
Q  37 tgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacga 136  Q
    |||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||| | |||||| ||||||| |||||||||| |||||||||||     
T  32716912 tgaccatgtgtactttcctttgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgtgaccatgacgg 32716813  T
Q  137 gaattcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagattg 236  Q
    |||||||||||||||| ||||||||||||||||| ||| |||| ||||  | | |||||||| ||||||||||||| |||||||||||||||||| ||||    
T  32716812 gaattcctaaagaattgaccctcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattg 32716713  T
Q  237 ttccacttgaccatgtgtattttcccttgccatgaaaaag 276  Q
    ||||| || |||| ||||| |||||||||||||| |||||    
T  32716712 ttccatttaaccacgtgtactttcccttgccatggaaaag 32716673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 39 - 312
Target Start/End: Complemental strand, 32717324 - 32717051
Alignment:
Q  39 accatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacgaga 138  Q
    |||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||| ||||||||  |||||| |||| ||||| ||||||||||| ||    
T  32717324 accatgtgtactttcctttgccatggtaaagatcactctcgaagttaccaatgtagatatccccatcagattttttaagggtgccgtgaccatgacggga 32717225  T
Q  139 attcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagattgtt 238  Q
    |||||   ||||||||||||||||| ||| || ||| |||| ||||  | | |||||||||||| || |||||| ||||||||||||||| || |||  |    
T  32717224 attcccggagaattcaccctcaaaagttgatcctgatggatatatgatctgacctttcccagtcattcttccatcaacccaatcaccctcgtatatttct 32717125  T
Q  239 ccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatccccatt 312  Q
    |||  || ||||||||| |||||||||||||  ||||| |  | |||||| |||||||||||||||| ||||||    
T  32717124 ccatctggccatgtgtactttcccttgccattgaaaagatcactcttgaagttaccaatgtagacatgcccatt 32717051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 40 - 276
Target Start/End: Complemental strand, 32717116 - 32716880
Alignment:
Q  40 ccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacgagaa 139  Q
    ||||||||||||||||||||||| |||||||||| | | |||||||||||||||||||| |||||||||| | ||||| ||||| ||||||||||| |||    
T  32717116 ccatgtgtactttcccttgccattgaaaagatcactcttgaagttaccaatgtagacatgcccattggatatggtaagggtgccttgaccatgacgggaa 32717017  T
Q  140 ttcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagattgttc 239  Q
    ||||||||||||| |||||||||||||| || |||  ||| |||     | |||||||| |||||| |||||| |||||||||||| || || |||||||    
T  32717016 ttcctaaagaattgaccctcaaaacttgttcctgatagatatatcatttgccctttccctgtccttcttccatcaacccaatcaccatcgtatattgttc 32716917  T
Q  240 cacttgaccatgtgtattttcccttgccatgaaaaag 276  Q
    ||  |||||||||||| ||||| |||||||| |||||    
T  32716916 catgtgaccatgtgtactttcctttgccatggaaaag 32716880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 32717549 - 32717259
Alignment:
Q  21 catataatattcctattgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagt 120  Q
    |||||| | |||| |||||||| || ||||||||||    ||||||||||| | | |||  |||| || ||||||| ||||| || ||||||||| ||||    
T  32717549 catatattgttccaattgaccaagtttactttccctgcgaatggaaaagattactctcggtgttatcactgtagacttccccgtttgattttgtatgagt 32717450  T
Q  121 gccatgaccatgacgagaattcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaa 220  Q
     || |||||||||   ||||||||| |||||||||||||||||||||||| ||| |||| |||   | |||||||||| |||||| |||||| |||||||    
T  32717449 tccgtgaccatgaaaggaattcctagagaattcaccctcaaaacttgctcctgatggatatattatccgtcctttccctgtccttcttccatcaacccaa 32717350  T
Q  221 tcaccctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatccccat 311  Q
    |||||||| || |||||||||  | |||||||||| ||||| ||||||||  |||| |  | || ||| ||||||||||||| ||||||||    
T  32717349 tcaccctcgtatattgttccatctaaccatgtgtactttcctttgccatggtaaagatcactctcgaagttaccaatgtagatatccccat 32717259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 314
Target Start/End: Complemental strand, 32714166 - 32714014
Alignment:
Q  162 aacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagattgttccacttgaccatgtgtattttcc 261  Q
    ||||||||| ||| |||| ||||  | | |||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  32714166 aacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatgtgtactttcc 32714067  T
Q  262 cttgccatgaaaaagttttcccttgaaattaccaatgtagacatccccatttg 314  Q
    |||||||||   | |||||||||||| |  |||||||||||||||||||||||    
T  32714066 cttgccatgcttacgttttcccttgacaaaaccaatgtagacatccccatttg 32714014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 25842158 - 25842120
Alignment:
Q  322 caaataaaggggtaaaattggaaaggaaaaattgagccc 360  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  25842158 caaatgaaggggtaaaattggaaaggaaaaattcagccc 25842120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 38 - 276
Target Start/End: Original strand, 14904809 - 14905047
Alignment:
Q  38 gaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacgag 137  Q
    ||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| |||| ||| | |||||||||||||    
T  14904809 gaccatgtgtattttcctttgccatggaaaagatcattcttgaagttaccaatgtagacatccccgttggattttataagggtgtcgtgaccatgacgag 14904908  T
Q  138 aattcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagattgt 237  Q
    |||   ||||||||||||||||||||||| ||| ||| |||  |||   | | |||||||| ||| ||||||||| |||||| ||||||||||| |||      
T  14904909 aatctttaaagaattcaccctcaaaactttctcctgatggaaatatcatccgccctttccctgtcttttttccatcaacccagtcaccctcatatatttg 14905008  T
Q  238 tccacttgaccatgtgtattttcccttgccatgaaaaag 276  Q
    ||||| |||||||||||| |||||||||||||| |||||    
T  14905009 tccacctgaccatgtgtactttcccttgccatggaaaag 14905047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 14905429 - 14905623
Alignment:
Q  37 tgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacga 136  Q
    |||||||||||||||||||||||||||||||  | || | | ||||||||||||||||| || ||| |||||||||||||| ||||| |||||||||||     
T  14905429 tgaccatgtgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgccttgaccatgacgg 14905528  T
Q  137 gaattcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcata 231  Q
    |||||||||||||||||||||||||||||||||| ||| |||| |||   | | |||||||||||||||| ||| | |||||| |||||||||||    
T  14905529 gaattcctaaagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcata 14905623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 312
Target Start/End: Original strand, 14905015 - 14905290
Alignment:
Q  37 tgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgacga 136  Q
    |||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||| |||||| |||||| ||||||| ||| | || |||||||      
T  14905015 tgaccatgtgtactttcccttgccatggaaaagaccattctcaaagttaccaatatagagatccccgttggatcttgtaagggtgtcgtgtccatgactg 14905114  T
Q  137 gaattcctaaagaattcaccctcaaaacttgctcttgacggatttatgtccggtcctttcccagtcctttttccattaacccaatcaccctcatagattg 236  Q
       ||| |  ||||| |||||||||||||||||  ||| |||   ||     |||||||||| |||||  |||||| |||||||||||||||||| |||     
T  14905115 atgttcattgagaatccaccctcaaaacttgcttctgatggaaagatcattcgtcctttccctgtcctgcttccataaacccaatcaccctcatatattt 14905214  T
Q  237 ttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatccccatt 312  Q
     |||   |||||||||| | |||||||||||||| ||||| ||   || ||| ||||||| |||||||||||||||    
T  14905215 ctccctctgaccatgtgcactttcccttgccatggaaaagattattctcgaagttaccaacgtagacatccccatt 14905290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 14905222 - 14905319
Alignment:
Q  37 tgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccattggattttgtaagagtgccatgaccatgac 134  Q
    |||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| | |||||  ||||| ||||||||||    
T  14905222 tgaccatgtgcactttcccttgccatggaaaagattattctcgaagttaccaacgtagacatccccattggaatgtgtaaaggtgccgtgaccatgac 14905319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 309
Target Start/End: Original strand, 14904757 - 14904873
Alignment:
Q  193 tttcccagtcctttttccattaacccaatcaccctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaatta 292  Q
    |||||| |||||| |||||| |||||||||||||||||| ||| ||||| | ||||||||||||||||| |||||||| ||||| |    |||||| |||    
T  14904757 tttccctgtccttcttccatcaacccaatcaccctcatatatttttccattcgaccatgtgtattttcctttgccatggaaaagatcattcttgaagtta 14904856  T
Q  293 ccaatgtagacatcccc 309  Q
    |||||||||||||||||    
T  14904857 ccaatgtagacatcccc 14904873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 314
Target Start/End: Original strand, 34916661 - 34916784
Alignment:
Q  191 cctttcccagtcctttttccattaacccaatcaccctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaat 290  Q
    |||||||| |||  |||||||| |||||| |||||||| || ||||||||| ||| ||||||||| |||||| ||||||| | |||||  |||||||| |    
T  34916661 cctttccctgtcacttttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttcccatgccatggagaagttcacccttgaatt 34916760  T
Q  291 taccaatgtagacatccccatttg 314  Q
    ||||||||||||||||||||||||    
T  34916761 taccaatgtagacatccccatttg 34916784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 34534099 - 34534216
Alignment:
Q  192 ctttcccagtcctttttccattaacccaatcaccctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaatt 291  Q
    ||||||| ||| ||| ||||| ||||||||| |||||||| |||||||||  |||||||||||| || || ||||||||| ||||||  |||||||| ||    
T  34534099 ctttccctgtcatttgtccatcaacccaatcgccctcatatattgttccatctgaccatgtgtacttcccgttgccatgacaaagttcacccttgaagtt 34534198  T
Q  292 accaatgtagacatcccc 309  Q
    ||||||||||||||||||    
T  34534199 accaatgtagacatcccc 34534216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 38454144 - 38454250
Alignment:
Q  208 tccattaacccaatcaccctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatcc 307  Q
    ||||| || ||||||||||||||| | || ||||| |||| ||||| | ||||| ||||||||||||||||   ||||||| ||||||| ||||||||||    
T  38454144 tccatcaatccaatcaccctcatatactgatccacatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtagacatcc 38454243  T
Q  308 ccatttg 314  Q
    |||||||    
T  38454244 ccatttg 38454250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 300
Target Start/End: Original strand, 34544941 - 34545050
Alignment:
Q  191 cctttcccagtcctttttccattaacccaatcaccctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaat 290  Q
    |||||||| ||| ||||||||| |||||| |||||||| || ||||||||| ||| ||||||||| |||||  ||||||||  || ||  ||| |||| |    
T  34544941 cctttccctgtcatttttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttccgatgccatgaggaatttcacccctgaatt 34545040  T
Q  291 taccaatgta 300  Q
    ||||||||||    
T  34545041 taccaatgta 34545050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 38453535 - 38453626
Alignment:
Q  223 accctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatccccatttg 314  Q
    |||||| || ||||||||| ||||  ||||||||||||| ||||||||||   |||| | | |||| |||||||||| ||||||||||||||    
T  38453535 accctcgtacattgttccatttgaaaatgtgtattttccgttgccatgaagttgtttactcctgaagttaccaatgtcgacatccccatttg 38453626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 34916717 - 34916782
Alignment:
Q  40 ccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccatt 105  Q
    |||||||||||||||| ||||||||| ||| |||   | ||| |||||||||||||||||||||||    
T  34916717 ccatgtgtactttcccatgccatggagaagttcacccttgaatttaccaatgtagacatccccatt 34916782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 38454180 - 38454248
Alignment:
Q  37 tgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatccccatt 105  Q
    |||| ||||| ||||||| |||||||| ||||| ||||  | ||||||||||| |||||||||||||||    
T  38454180 tgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtagacatccccatt 38454248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 39848948 - 39848853
Alignment:
Q  214 aacccaatcaccctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatcccc 309  Q
    ||||||||||||||| || ||||||||| ||||   |||||||||||| ||| |||| | |||||| | | |||| |||||||| | |||||||||    
T  39848948 aacccaatcaccctcgtatattgttccatttgagtgtgtgtattttccattgtcatggagaagtttactcctgaagttaccaatatcgacatcccc 39848853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 38632380 - 38632290
Alignment:
Q  214 aacccaatcaccctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagaca 304  Q
    ||||||||||||||||||  ||| ||||  ||||||| || | |||||  ||||||||  |||||  |||||||| |||||||||||||||    
T  38632380 aacccaatcaccctcatatgttgatccatctgaccatttgcactttccgctgccatgacgaagttcacccttgaagttaccaatgtagaca 38632290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 34534151 - 34534216
Alignment:
Q  37 tgaccatgtgtactttcccttgccatggaaaagatcattttcgaagttaccaatgtagacatcccc 102  Q
    ||||||||||||||| || ||||||||  |||| |||   | ||||||||||||||||||||||||    
T  34534151 tgaccatgtgtacttcccgttgccatgacaaagttcacccttgaagttaccaatgtagacatcccc 34534216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 39848111 - 39848030
Alignment:
Q  190 tcctttcccagtcctttttccattaacccaatcaccctcatagattgttccacttgaccatgtgtattttcccttgccatga 271  Q
    ||||||||| ||| | | ||||| ||||||||||||| |||| |||| ||||  |||||||||||| ||||  |||||||||    
T  39848111 tcctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgtactttcttttgccatga 39848030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 34548864 - 34548928
Alignment:
Q  189 gtcctttcccagtcctttttccattaacccaatcaccctcatagattgttccacttgaccatgtg 253  Q
    |||||||||| ||| ||||||||| ||||||||| || ||||| |||||||   |||||||||||    
T  34548864 gtcctttccctgtcatttttccatcaacccaatcgccttcatatattgttctgtttgaccatgtg 34548928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 34548966 - 34549042
Alignment:
Q  84 taccaatgtagacatccccattggattttgtaagagtgccatgaccatgacgagaattcctaaagaattcaccctca 160  Q
    ||||||||||||  |||||||| ||||||||| || || |||||||||||    || ||| ||||||||||||||||    
T  34548966 taccaatgtagatgtccccattcgattttgtacgaatgtcatgaccatgatcgcaactcccaaagaattcaccctca 34549042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 38632459 - 38632427
Alignment:
Q  128 ccatgacgagaattcctaaagaattcaccctca 160  Q
    ||||||||| |||||||||||||||||||||||    
T  38632459 ccatgacgacaattcctaaagaattcaccctca 38632427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 7046911 - 7047008
Alignment:
Q  217 ccaatcaccctcatagattgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatccccatttg 314  Q
    |||||| |||||||| |||| ||||  |||||||||||| ||||| |||||||||  |||||  ||||| || ||| |||||||||||  ||||||||    
T  7046911 ccaatctccctcatatattgatccatctgaccatgtgtagtttccgttgccatgatgaagttgccccttaaagttatcaatgtagacactcccatttg 7047008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 44474795 - 44474714
Alignment:
Q  233 attgttccacttgaccatgtgtattttcccttgccatgaaaaagttttcccttgaaattaccaatgtagacatccccatttg 314  Q
    |||||| || |||| ||||||||| |||| ||| ||| || |||||| | | |||| |||||||||| ||||||||||||||    
T  44474795 attgtttcatttgaacatgtgtatgttccgttgtcataaagaagtttactcctgaagttaccaatgtcgacatccccatttg 44474714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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