View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_low_9 (Length: 441)
Name: NF12077_low_9
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 11179336 - 11178915
Alignment:
| Q |
1 |
attatcgtgatccaccacatacacacatcatatatgtatgcagaaaatattgaacctcttcgatattttccaagcgtatgtttagaatgagctagccatt |
100 |
Q |
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| T |
11179336 |
attatcgtgatccaccacatacacacatcatatatgtatgcagaaaatattgaacctcttcgatattttccaagcgtatgtttagaatgagctagccatt |
11179237 |
T |
|
| Q |
101 |
ccatcttctgatgattctttggtgactacagaagccaatccagaagaattcccattcacaacattacattgtgttctaatttcaccttgagatccagtta |
200 |
Q |
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| T |
11179236 |
ccatcttctgatgattctttggtgactacagaagccaatccagaagaattcccattcacagcattacattgtgttctaatttcaccttgagatccagtta |
11179137 |
T |
|
| Q |
201 |
aaactccaatattacccatttttatcattgaagcaacaaaattttcaaagaagagagtttgattattggcgaaactattgacaatagaaatagtgtcaga |
300 |
Q |
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| T |
11179136 |
aaactccaatattacccatttttatcattgaagcaacaaaattttcaaagaagagagtttgattattggcgaaactattgacaatagaaatagtgtcaga |
11179037 |
T |
|
| Q |
301 |
accatttgtggaaaaaagctcttggtcactctgaaacaagccatttccaacttggagattggagtagtagttggagtcaaatgtatcaggtgtcgttggg |
400 |
Q |
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| T |
11179036 |
accatttgtggaaaaaagctcttggtcactttgaaacaagccatttccaacttggagattggagtagtagttggagtcaaatgtatcaggtgtcgttggg |
11178937 |
T |
|
| Q |
401 |
tccaaatcggttaggttcgtac |
422 |
Q |
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| T |
11178936 |
tccaaatcggttaggttcgtac |
11178915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 164 - 387
Target Start/End: Original strand, 11190712 - 11190935
Alignment:
| Q |
164 |
ttacattgtgttctaatttcaccttgagatccagttaaaactccaatattacccatttttatcattgaagcaacaaaattttcaaagaagagagtttgat |
263 |
Q |
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| T |
11190712 |
ttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatggaggccttaaaagcttcaaagaaaagagtttgat |
11190811 |
T |
|
| Q |
264 |
tattggcgaaactattgacaatagaaatagtgtcagaaccatttgtggaaaaaagctcttggtcactctgaaacaagccatttccaacttggagattgga |
363 |
Q |
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| || || ||||| ||||| | ||| || |||| |||| |||||||||||||||||| |||||||||||||| ||||||||| |||| |||||||| |
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| T |
11190812 |
tgctgctaaagctattaacaatggcaatggtatcagcaccaggtgtggaaaaaagctcttgatcactctgaaacaaaccatttccagcttgaagattgga |
11190911 |
T |
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| Q |
364 |
gtagtagttggagtcaaatgtatc |
387 |
Q |
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| T |
11190912 |
gtagtagtttgagtcgaatgtatc |
11190935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 339
Target Start/End: Original strand, 11183488 - 11183663
Alignment:
| Q |
164 |
ttacattgtgttctaatttcaccttgagatccagttaaaactccaatattacccatttttatcattgaagcaacaaaattttcaaagaagagagtttgat |
263 |
Q |
| |
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||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||| || ||||| || || |||| ||||||||| |||||||||| |
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| T |
11183488 |
ttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatggaggccttaaaagcttcaaagaaaagagtttgat |
11183587 |
T |
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| Q |
264 |
tattggcgaaactattgacaatagaaatagtgtcagaaccatttgtggaaaaaagctcttggtcactctgaaacaa |
339 |
Q |
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| T |
11183588 |
tgctgctaaagctattaacaatggcaatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaa |
11183663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 342
Target Start/End: Complemental strand, 11173090 - 11172893
Alignment:
| Q |
145 |
agaattcccattcacaacattacattgtgttctaatttcaccttgagatccagttaaaactccaatattacccatttttatcattgaagcaacaaaattt |
244 |
Q |
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|||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||| ||| ||| ||| |||||| ||||| || || |||| | |
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| T |
11173090 |
agaatttccattaacaaagttacattgttttctaatttcaccttgagatccagttaacactttaattctactcattttaatcatcgaggccttaaaagct |
11172991 |
T |
|
| Q |
245 |
tcaaagaagagagtttgattattggcgaaactattgacaatagaaatagtgtcagaaccatttgtggaaaaaagctcttggtcactctgaaacaagcc |
342 |
Q |
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| T |
11172990 |
tcaaagaaaagagtttggttgttgttgaaactgttgacaatggcaatcgtgtccgcgccacttgtggaagacaatacttggtcactctgaaacaagcc |
11172893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 407
Target Start/End: Complemental strand, 11137740 - 11137647
Alignment:
| Q |
314 |
aaaagctcttggtcactctgaaacaagccatttccaacttggagattggagtagtagttggagtcaaatgtatcaggtgtcgttgggtccaaat |
407 |
Q |
| |
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| T |
11137740 |
aaaagctcttggtcactctgaagcaaaccctttttaccctgaagattggagtagtagttcttgtcaaatttatcaggagtcgttgggtcaaaat |
11137647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 11190636 - 11190681
Alignment:
| Q |
82 |
ttagaatgagctagccattccatcttctgatgattctttggtgact |
127 |
Q |
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||||||||||||| | || |||||||||||||| |||||||||||| |
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| T |
11190636 |
ttagaatgagctaacaataccatcttctgatgaatctttggtgact |
11190681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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