View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12078_high_1 (Length: 555)
Name: NF12078_high_1
Description: NF12078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12078_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 21 - 548
Target Start/End: Original strand, 8552022 - 8552546
Alignment:
| Q |
21 |
taagctaagagaggaggacatgcaaataataatgactatagtagatgttgtaagtggtaactattttcgatgttggttcaaacttcaaaatatatactct |
120 |
Q |
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| T |
8552022 |
taagctaagagaggaggacatgcaaataataatgactatattagatgttgtaagtggtaactattttcgatgttggttcaaacttcaaaatatatactct |
8552121 |
T |
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| Q |
121 |
cctagtgaacagaaaagagggtcacagacagacagacacagtttgcacagtctaattctatgcttttttaatttctctcctttaacggacctgttgcttg |
220 |
Q |
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| T |
8552122 |
cctagtgaacagaaaagagggtcacag----acagacacagtttgcacagtctaattctatgcttttttaatttctctcctttaacggacctgttgcttg |
8552217 |
T |
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| Q |
221 |
ccctatttatttttatgcaatttcttagtcatatccttctgtcatttacacacacataaaatgctcagagatacataaaataaagctgtatctctatctc |
320 |
Q |
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| T |
8552218 |
ccctatttatttttatgcaatttcttagtcatatccttctgtcatttacacacacataaaatgctcagagatacataaaataaagctgtatctctatctc |
8552317 |
T |
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| Q |
321 |
tatactatagcataagaagatattaataatatgaatcagacaatgag-nnnnnnngaaaaccaaacttgccgtacaagttgtcagttccttaagaccaca |
419 |
Q |
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| T |
8552318 |
tatactatagcataagaagatattaataatatgaatcagacaatgagaaaaaaaagaaaaccaaacttgccgtacaagttgtcagttccttaagaccaca |
8552417 |
T |
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| Q |
420 |
ccactgacaaaaatggcttcattggtccccacctaaatctctgtctacagtacttatttataactcactcacgtgctataaccatcaataaatcaaatta |
519 |
Q |
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| T |
8552418 |
ccactgacaaagatggcttcattggtccccacctaaatctctgtctacagtacttatttataactcactcacgtgctataaccattaataaatcaaatta |
8552517 |
T |
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| Q |
520 |
atactctagtcactcatttattcatctca |
548 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
8552518 |
atactctagtgactcatttattcatctca |
8552546 |
T |
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