View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12078_high_7 (Length: 263)
Name: NF12078_high_7
Description: NF12078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12078_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 14670567 - 14670407
Alignment:
| Q |
88 |
ttatcataaagattcgtgttcaaccatatcaaggttagcccgtcgataactcaatgaattttgtatttcgatgatcctaaatatttttcttttgttgaca |
187 |
Q |
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| T |
14670567 |
ttatcacaaagattcgtgttcaaccatatcaaggttagcctgtagataaatcaatgaattgtgtatttcgaggatcctaaatattttgcttttgttgaca |
14670468 |
T |
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| Q |
188 |
aagaatctacattttattgtcagtatattctgaggatggctcccctatgtattcttattca |
248 |
Q |
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| T |
14670467 |
aaaaatctacattttattgtcagtatattttgaggatggctcccctatgtatacatattca |
14670407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 14660176 - 14660015
Alignment:
| Q |
88 |
ttatcataaagattcgtgttcaaccatatcaaggttagcccgtcgataactcaatgaattttgtatttcgatgatcctaaatatttttcttttgttgaca |
187 |
Q |
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| T |
14660176 |
ttatcacaaagattcgtgttcaaccataccaaggttatcccatagataaaccaatgaattgtgtatattgaggatcctaaactttttgctttagctgaca |
14660077 |
T |
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| Q |
188 |
aagaatctacattttattg-tcagtatattctgaggatggctcccctatgtattcttattca |
248 |
Q |
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| T |
14660076 |
aagaatctacattttattgttcagcattttgtgaggatgactcccctatgtatacatattca |
14660015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14670769 - 14670708
Alignment:
| Q |
1 |
cctataagcgacatgcttgacgtttgtgaagattgggagcgtctcaagagaaatcataaagt |
62 |
Q |
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| T |
14670769 |
cctataagcgacatgcttgacgtttgtgaagattgggagcgtctcaagagaaatcataaagt |
14670708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 14660355 - 14660314
Alignment:
| Q |
21 |
cgtttgtgaagattgggagcgtctcaagagaaatcataaagt |
62 |
Q |
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| T |
14660355 |
cgtttgtgcagattgggagtgtctcaagagaaatcataaagt |
14660314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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