View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12078_low_10 (Length: 254)

Name: NF12078_low_10
Description: NF12078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12078_low_10
NF12078_low_10
[»] chr5 (3 HSPs)
chr5 (38-137)||(12252711-12252810)
chr5 (164-241)||(12252837-12252914)
chr5 (38-126)||(12245098-12245186)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 12252711 - 12252810
Alignment:
Q  38 tcttcacaagcaatcaacattttatgacccttttctgcagtataatcattacaaggtttaccaggaatcgatgtgcatgaatataaatcatattgtctaa 137  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12252711 tcttcacaggcaatcaacattttatgacccttttctgcagtataatcattacaaggtttaccaggaatcgatgtgcatgaatataaatcatattgtctaa 12252810  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 12252837 - 12252914
Alignment:
Q  164 ttagaagcagttgctgcatattggtaattggtgattccaaccatcttattgattaatttggtccaaaaccatcaacct 241  Q
    ||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12252837 ttagaagcagttgctgagtatttgtaattggtgattccaaccatcttattgattaatttggtccaaaaccatcaacct 12252914  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 12245098 - 12245186
Alignment:
Q  38 tcttcacaagcaatcaacattttatgacccttttctgcagtataatcattacaaggtttaccaggaatcgatgtgcatgaatataaatc 126  Q
    |||||| ||| ||||||||||||||||| ||| |  || ||||||||||| |||||||||| || |||||||||||| |||||||||||    
T  12245098 tcttcataaggaatcaacattttatgacacttcttcgcggtataatcatttcaaggtttacgagtaatcgatgtgcacgaatataaatc 12245186  T

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