View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12078_low_13 (Length: 203)

Name: NF12078_low_13
Description: NF12078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12078_low_13
NF12078_low_13
[»] chr2 (4 HSPs)
chr2 (18-129)||(7393660-7393771)
chr2 (18-129)||(19583337-19583448)
chr2 (124-188)||(19584062-19584126)
chr2 (124-188)||(7392983-7393047)
[»] chr8 (1 HSPs)
chr8 (18-129)||(31211208-31211319)
[»] chr4 (4 HSPs)
chr4 (18-129)||(16033588-16033699)
chr4 (124-188)||(16034313-16034377)
chr4 (18-74)||(11655514-11655570)
chr4 (124-188)||(11655801-11655865)
[»] chr7 (3 HSPs)
chr7 (18-129)||(20075208-20075315)
chr7 (18-80)||(23095385-23095447)
chr7 (124-166)||(20075961-20076003)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 7393771 - 7393660
Alignment:
Q  18 aactttaacaatagatattcattgtagacatagtcatctatttaaagatgagttaacactgtcaaacgcaaaaacaaacaaaaagaatacaatgctaata 117  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||   |    
T  7393771 aactttaacaatagatattcattgtagacaaagtcatctgtttaaagataagttaacattgtcaaacgcaaaaacaaacaaaaagaatgcaatgcttgca 7393672  T
Q  118 tgatagttcata 129  Q
    ||||||||||||    
T  7393671 tgatagttcata 7393660  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 19583337 - 19583448
Alignment:
Q  18 aactttaacaatagatattcattgtagacatagtcatctatttaaagatgagttaacactgtcaaacgcaaaaacaaacaaaaagaatacaatgctaata 117  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||   |    
T  19583337 aactttaacaatagatattcattgtagacaaagttatctgtttaaagataagttaacattgtcaaacgcaaaaacaaacaaaaagaatgcaatgcttgca 19583436  T
Q  118 tgatagttcata 129  Q
    ||||||||||||    
T  19583437 tgatagttcata 19583448  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 19584062 - 19584126
Alignment:
Q  124 ttcatattataggcgttgttaagttcattcacaccatgagttaaacataatttgtcattcttctt 188  Q
    |||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19584062 ttcaaattataagtgttgttaagttcattcacgccatgagttaaacataatttgtcattcttctt 19584126  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 7393047 - 7392983
Alignment:
Q  124 ttcatattataggcgttgttaagttcattcacaccatgagttaaacataatttgtcattcttctt 188  Q
    |||| |||||| | |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  7393047 ttcaaattataagtgttgttaagttcattcacgccatgagttaaacataatttttcattcttctt 7392983  T

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Target: chr8 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 31211208 - 31211319
Alignment:
Q  18 aactttaacaatagatattcattgtagacatagtcatctatttaaagatgagttaacactgtcaaacgcaaaaacaaacaaaaagaatacaatgctaata 117  Q
    ||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  | |    
T  31211208 aactttaacgatagatattcattgtagacataatcatttgtttaaagatgagttaacactgtcaaacgcaaaaacaaacataaagaatgcaatgcctaca 31211307  T
Q  118 tgatagttcata 129  Q
    ||||||||||||    
T  31211308 tgatagttcata 31211319  T

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Target: chr4 (Bit Score: 76; Significance: 2e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 16033588 - 16033699
Alignment:
Q  18 aactttaacaatagatattcattgtagacatagtcatctatttaaagatgagttaacactgtcaaacgcaaaaacaaacaaaaagaatacaatgctaata 117  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||   |    
T  16033588 aactttaacaatagaaattcattgtagacaaagtcatctgtttaaagataagttaacattgtcaaacgcaaaaacaaacaaaaagaatgcaatgcttgca 16033687  T
Q  118 tgatagttcata 129  Q
    ||||||||||||    
T  16033688 tgatagttcata 16033699  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 16034313 - 16034377
Alignment:
Q  124 ttcatattataggcgttgttaagttcattcacaccatgagttaaacataatttgtcattcttctt 188  Q
    |||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16034313 ttcaaattataagtgttgttaagttcattcacgccatgagttaaacataatttgtcattcttctt 16034377  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 11655514 - 11655570
Alignment:
Q  18 aactttaacaatagatattcattgtagacatagtcatctatttaaagatgagttaac 74  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  11655514 aactttaacaatagatattcattgtagacaaagtcatctgtttaaagataagttaac 11655570  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 11655801 - 11655865
Alignment:
Q  124 ttcatattataggcgttgttaagttcattcacaccatgagttaaacataatttgtcattcttctt 188  Q
    |||| |||||| | |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  11655801 ttcaaattataagtgttgttaagttcattcacgccatgagttaaacataatttttcattcttctt 11655865  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 20075208 - 20075315
Alignment:
Q  18 aactttaacaatagatattcattgtagacatagtcatctatttaaagatgagttaacactgtcaaacgcaaaaacaaacaaaaagaatacaatgctaata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||  ||||||| ||||||| | |    
T  20075208 aactttaacaatagatattcattgtagacatagtcatctatttaaagatgagttaacac--tcaaaagcaaaaacaaac--aaagaatgcaatgcttaca 20075303  T
Q  118 tgatagttcata 129  Q
    ||||||||||||    
T  20075304 tgatagttcata 20075315  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 23095385 - 23095447
Alignment:
Q  18 aactttaacaatagatattcattgtagacatagtcatctatttaaagatgagttaacactgtc 80  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  23095385 aactttaacaatagatattcattgtagacatagtcatctgtttaaagataagttaacattgtc 23095447  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 20075961 - 20076003
Alignment:
Q  124 ttcatattataggcgttgttaagttcattcacaccatgagtta 166  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  20075961 ttcatattataagcgttgttaagttcattcacaccatgagtta 20076003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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