View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12078_low_2 (Length: 537)
Name: NF12078_low_2
Description: NF12078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12078_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 42393714 - 42394235
Alignment:
| Q |
1 |
ttggagtctatggaaatgtagaaactcaaagttgtgtggaaataaaactacatgtgttccatcccttctcacgaccgttcgagattcacttcactaatgg |
100 |
Q |
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| T |
42393714 |
ttggaggctatggaaatgtagaaactcaaagttgtgtggaaataaaactacatgtgttccatcccttctcacgaccgttcgagattcacttcactaatgg |
42393813 |
T |
|
| Q |
101 |
tgaatcatgcggcaaagacatcaccaatgtgagactcaaacatcccgtgacagatggataaaacccccacctggttttctcaaatgcagtgtcaaatctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393814 |
tgaatcatgcggcaaagacatcaccaatgtgagactcaaacatcccgtgacagatggataaaacccccacctggttttctcaaatgcagtgtcaaatcta |
42393913 |
T |
|
| Q |
201 |
ctttattttcggccaacagagctatgaaaattggcctttgttttagagactctgagggcaaattcgtatggggtcgaacagtttagtcctgcggttctct |
300 |
Q |
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| T |
42393914 |
ctttattttcagccaacagagttatgaaaattggcctttgttttagagactctgagggcaaattcgtatggggtcgaacagtttggtcctgcggttctct |
42394013 |
T |
|
| Q |
301 |
acagcttgctcattcacaaggactccaacaggttattttcgtgacagatagtaaaacagtagtgaatgccataaacagtccctcctgttttacaactgaa |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394014 |
acagcttgctcattcacaaggcctccaacaggttattttcgtgacagatagtaaaacagtagtgaatgccataaacagtccctcctgttttacaactgaa |
42394113 |
T |
|
| Q |
401 |
ctgggtgatattgtaaaccagtgcaagtctattctcagtttgcacactgattaaatagtggatttatccagagacaagtcaaccaggttgcgcattgctt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42394114 |
ctgggtgatattgtaaaccagtgcaagtctattctcagtttgcacactgattaaatagtggatttatccagagacaagtcaaccaggttgcgcattgctt |
42394213 |
T |
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| Q |
501 |
aactagattatcctatacctat |
522 |
Q |
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|||||||||||||||| ||||| |
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| T |
42394214 |
aactagattatcctattcctat |
42394235 |
T |
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