View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12078_low_3 (Length: 427)
Name: NF12078_low_3
Description: NF12078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12078_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 31407890 - 31407480
Alignment:
| Q |
1 |
gaacttgccgtcggattttatccattgttttaaaaattagaccggagatcagatgaatgagacttaaaggatcacggattaacttattcaatgagttcct |
100 |
Q |
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| T |
31407890 |
gaacttgccgttggattttattcattgttttaaaaattagaccggagatcaaatgaatgagacttaaagggtcacggattaacttattcaatgagttcct |
31407791 |
T |
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| Q |
101 |
agggatgaacaatatttcttgtgga------gaaacgagcaaatgaactgtttgaatcacaatataatgaaattgaaaccaagattatgtgaaagtgata |
194 |
Q |
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| T |
31407790 |
agggatgaacaatatttcttgtggacttatagaaacgagcaaatgaactgtt-----cacaatatgatgaaattgaaaccaagattatgtgaaagtgata |
31407696 |
T |
|
| Q |
195 |
tttgattttgtcaattgatgtgtgtcatgcaggttgtgcgtaagccagcacatcatttcttggacgagcttgaaattgagtatgacgaacaggacgacta |
294 |
Q |
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| T |
31407695 |
tttgattgtgtgaattgatgtgtgtcatgcaggttgtgcgtaagccagcacatcatttcttggacgagcttgaaattgagtatgatgaacaggacgacta |
31407596 |
T |
|
| Q |
295 |
tgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtgaagcttttcaatgctgtagctgctgaggat |
394 |
Q |
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| T |
31407595 |
tgtagtgatcaagcatgctgctctcttcacttccaccatcatgagcaagctactagcaaggccaaacgtgaagcttttcaatgctgtagctgctgaggat |
31407496 |
T |
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| Q |
395 |
ttgattgtgaagaatg |
410 |
Q |
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| T |
31407495 |
ttgattgtgaagaatg |
31407480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 270 - 406
Target Start/End: Complemental strand, 47481722 - 47481586
Alignment:
| Q |
270 |
ttgagtatgacgaacaggacgactatgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtgaagct |
369 |
Q |
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|||| ||||||||||| || ||||| || || ||||| ||||||||||| |||||||| || |||||||||||||| || |||| || || || || || |
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| T |
47481722 |
ttgaatatgacgaacaagaagactacgttgtcatcaaacacgctgctctattcacttcaaccatcatgagcaagcttcttgcaaaacctaatgtaaaact |
47481623 |
T |
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| Q |
370 |
tttcaatgctgtagctgctgaggatttgattgtgaag |
406 |
Q |
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| T |
47481622 |
tttcaatgctgttgctgctgaggatttgattgtgaag |
47481586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 4220543 - 4220584
Alignment:
| Q |
302 |
atcaagcacgctgctctcttcacttccacaatcatgagcaag |
343 |
Q |
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| T |
4220543 |
atcaagcacgctgctctcttaacttccacaatcatgagcaag |
4220584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 4220463 - 4220500
Alignment:
| Q |
79 |
ttaacttattcaatgagttcctagggatgaacaatatt |
116 |
Q |
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| T |
4220463 |
ttaacttattcaatgagttcatagggatgaacaatatt |
4220500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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