View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12078_low_4 (Length: 348)
Name: NF12078_low_4
Description: NF12078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12078_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 4825325 - 4825533
Alignment:
| Q |
6 |
tgcaattcgacattcactgtaagttcttgaaccctaatttgaactcgttttggtcccaattcattttgatactaagttctcattcacgtgcatcttttcc |
105 |
Q |
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| T |
4825325 |
tgcaattcgacattcactgtaagttcttgaaccctaatttgaactcgttttggtcccaatttattttgatactaagttctcattcacgtgcatcttttcc |
4825424 |
T |
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| Q |
106 |
attgttgttctcagttggaagttgttattaacgcacatctccgatttgtgaacccatagctttgaaaatatcagaactggtgttctcagttggaaattgt |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4825425 |
attgttgttctcagttggaagttgttattaacacacatctccgatttgtgaacccatagctttgaaaatatcagaactggtgttctcagttggaaattgt |
4825524 |
T |
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| Q |
206 |
catcctcat |
214 |
Q |
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||||||||| |
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| T |
4825525 |
catcctcat |
4825533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 7709249 - 7709149
Alignment:
| Q |
112 |
gttctcagttggaagttgttattaacgcacatctccgatttgtgaacccatagctttgaaaatatcagaactggtgttctcagttggaaattgtcatcct |
211 |
Q |
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| T |
7709249 |
gttctcagttggaagtggtgattcacgaacatccccgattcgtgaacccatagctttgaagatatcagaattggtgttctctattggaaattgtcgtcct |
7709150 |
T |
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| Q |
212 |
c |
212 |
Q |
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| |
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| T |
7709149 |
c |
7709149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 7709373 - 7709292
Alignment:
| Q |
9 |
aattcgacattcactgtaagttcttgaaccctaatttgaactcgttttggtcccaattcattttgatactaagttctcattcacg |
93 |
Q |
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| T |
7709373 |
aattcgacattcaccgtaagttctcgaacc---atttgaactcgttttggtcccaatttgttttgacactaagctctcattcacg |
7709292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 2151032 - 2150933
Alignment:
| Q |
235 |
atttggatttggtatatgcccgaactgacccaaatatacctataataactcgtaaaattcacccgactaatacgttattcatttaaacccgaaccaaatg |
334 |
Q |
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| T |
2151032 |
atttggatttggtatatacccgaaccgaaccaaatatagctataataatccgtaaaattcacccgactaatacattatccattttaacccaaaccaaatg |
2150933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 17165212 - 17165142
Alignment:
| Q |
112 |
gttctcagttggaagttgttattaacgcacatctccgatttgtgaacccatagctttgaaaatatcagaac |
182 |
Q |
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||||||||||||||||||| ||| |||||||||||||||| ||||||| |||| |||||| |||||||||| |
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| T |
17165212 |
gttctcagttggaagttgtgattcacgcacatctccgattcgtgaaccgatagatttgaagatatcagaac |
17165142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 55721541 - 55721585
Alignment:
| Q |
254 |
ccgaactgacccaaatatacctataataactcgtaaaattcaccc |
298 |
Q |
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||||||||| ||||||||||| ||||||||||| ||| ||||||| |
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| T |
55721541 |
ccgaactgaaccaaatatacccataataactcgcaaagttcaccc |
55721585 |
T |
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