View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12078_low_8 (Length: 260)
Name: NF12078_low_8
Description: NF12078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12078_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 4186483 - 4186352
Alignment:
| Q |
129 |
gcataacaatgattaatgaaatcatgagtaaaacaccacatcctttatattcgaagaaccccgtctcggtcagttcggagaagagattctggtaatcacg |
228 |
Q |
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| T |
4186483 |
gcataacaatgattaacgaaatcatgagtaaaacaccacatcctttatattcgaagaaccccatctcggtcagttcggagaagagattctggtaatcacg |
4186384 |
T |
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| Q |
229 |
ggacacatcagagacggcgcagtcacagaggt |
260 |
Q |
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| T |
4186383 |
ggacacatcagagacggcgcagtcacagaggt |
4186352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 4186597 - 4186551
Alignment:
| Q |
15 |
aagaatcatgactaatccaaccactttgaatccacaagaaacccatt |
61 |
Q |
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| T |
4186597 |
aagaatcatgactaatccaaccactttgaatccacaagaaacccatt |
4186551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 4195628 - 4195596
Alignment:
| Q |
16 |
agaatcatgactaatccaaccactttgaatcca |
48 |
Q |
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| T |
4195628 |
agaatcatgaccaatccaaccactttgaatcca |
4195596 |
T |
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