View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12079_low_1 (Length: 417)
Name: NF12079_low_1
Description: NF12079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12079_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 215 - 400
Target Start/End: Original strand, 47679084 - 47679269
Alignment:
| Q |
215 |
cacgcaggtttctcgaggttctggttcgaacaatgatccagagagtgttgatccttattttgtacgcaggtgggcacctgaggtaatttaaattcgatat |
314 |
Q |
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| T |
47679084 |
cacgcaggtttctcgagtttctggttcgaacaatgatccagagagtgttgatccttattttgtacgcaggtgggcacctgaggtaatttaaattcgatat |
47679183 |
T |
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| Q |
315 |
atacgatgctgctgtagtttaaacagtatcgaatatttattgtcaatattcttcgaattgcatgctaaacttactattgttacctt |
400 |
Q |
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| T |
47679184 |
atacgatgctgctgtagtttaaacagtatcgaatatttattgtcaatattcttcgaattgcatgctaaacttactattgttacctt |
47679269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 47678870 - 47679014
Alignment:
| Q |
1 |
taattgaatgtaatcacatgtgttggtgctggagtttggacacaatgtctagcaccagacacaccttctatcataagcgttggtgcttccgagttatttt |
100 |
Q |
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| T |
47678870 |
taattgaatgtaatcatatgtgttggtgctggagtttggacacagtgtctagcaccagacacaccttctatcataagcgttggtgcttccgagttatttt |
47678969 |
T |
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| Q |
101 |
accaatatttttggatttttatgttgtttatggtaatgatgattt |
145 |
Q |
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| T |
47678970 |
accactatttttggatttttatgttgtttatggtaatgatgattt |
47679014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29200990 - 29200962
Alignment:
| Q |
1 |
taattgaatgtaatcacatgtgttggtgc |
29 |
Q |
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| T |
29200990 |
taattgaatgtaatcacatgtgttggtgc |
29200962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 12650902 - 12650930
Alignment:
| Q |
1 |
taattgaatgtaatcacatgtgttggtgc |
29 |
Q |
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| T |
12650902 |
taattgaatgtaatcacatgtgttggtgc |
12650930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 50699199 - 50699231
Alignment:
| Q |
1 |
taattgaatgtaatcacatgtgttggtgctgga |
33 |
Q |
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| T |
50699199 |
taattgaatgtaatcacatgtgttggtgttgga |
50699231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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