View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_high_11 (Length: 490)
Name: NF12080_high_11
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 479
Target Start/End: Original strand, 1185987 - 1186455
Alignment:
| Q |
16 |
gcatgtacttttggtagatgaacatgcaatcaaccacctcatctctttttgtcatttgattgaatatataactttggactcctgtaaggtgttaagttct |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1185987 |
gcatgtacttttggtagatgaacatgcaatcaaccacctcatctctttttgtcatttgattgaatatataactttggactcctgtaaggtgctaagttct |
1186086 |
T |
|
| Q |
116 |
ggtggtggcacaagggagccaatgaagtctttaagaattagtggtctacaaaagctcaagagtgttgatgtttcaggaataaaatatg-----attgatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1186087 |
ggtggtggcacaagggagccaatgaagtctttaagaattagtggtctacaaaagctcaagagtgttgatgtttcaggaataaaatatgtttctattgatg |
1186186 |
T |
|
| Q |
211 |
cctcgagtcttgagaatttatgttattctcctggtaatcaaaattacggtgtaccatctattatcgatattgataggtgcagaaattttaaagagttatt |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1186187 |
cctcgagtcttgagaatttatgttattctcctggtaatcaaaattacggtgtaccatctattatcgatattgataggtgcagaaattttaaagagttatt |
1186286 |
T |
|
| Q |
311 |
tttgaggtctgtggcgagtacttttttcaccaacaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaa |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1186287 |
tttgaggtctgtggcgagtacttttttcaccaacaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaa |
1186386 |
T |
|
| Q |
411 |
attcctgagaggattgatatttcaagtgttcgacttaagaggttggagacgttttacaggtttcatctc |
479 |
Q |
| |
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| T |
1186387 |
attcctgagaggattgatatttcaagtgttcgacttaagaggttggagacgttttacaggtttcatctc |
1186455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 1180625 - 1181057
Alignment:
| Q |
19 |
tgtacttttggtagatgaacatgcaatcaaccacctcatctctttttgtcatttgattgaatatataactttggactcctgtaaggtgttaagttctggt |
118 |
Q |
| |
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||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
1180625 |
tgtactttttggagatgaacatgcaattaaccaactcatctctttttgtcctttgattgaatatataactttggatttatgtgaggtgttaagttctggt |
1180724 |
T |
|
| Q |
119 |
ggtggcacaagggagccaatgaagtctttaagaattagtggtctacaaaagctcaagagtgttgatgtttcaggaataaaatatg-----attgatgcct |
213 |
Q |
| |
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|||||||||||| | ||| ||| | | || ||||||||||||||||| |||||||||||||||||||||| |||| || ||| |||||||| | |
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| T |
1180725 |
ggtggcacaaggtat---atggagtatgtgagcattagtggtctacaaaatctcaagagtgttgatgtttcagcaatacaagatgtttctattgatgctt |
1180821 |
T |
|
| Q |
214 |
cgagtcttgagaatttatgttattctcctggtaatcaa-aattacggtgtaccatctattatcgatattgataggtgcagaaattttaaagagttatttt |
312 |
Q |
| |
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| |||||||||||||| ||||| | | ||| |||||||||| |||||||| || ||| |||||||||| |||||||| |||||||||| | |
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| T |
1180822 |
caagtcttgagaatttttgttacaatac-------caagaattacggtgcaccatctaagattgattttgataggtgtagaaatttaaaagagttatact |
1180914 |
T |
|
| Q |
313 |
tgaggtctgtggcgagtacttttttcaccaacaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaat |
412 |
Q |
| |
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|| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| |||| |
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| T |
1180915 |
tgtggtctgtggagagtacttca---acaaacaagtggtttcttgaattgtttccgaaattcccttttcttgagagtttgaaattaaacaattgtaaaat |
1181011 |
T |
|
| Q |
413 |
tcctgagaggattgatatttcaagtgttcgacttaagaggttggag |
458 |
Q |
| |
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||| ||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
1181012 |
gcctaagaagattgatatttcaagtgttcgacttaagagattggag |
1181057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 10202876 - 10202969
Alignment:
| Q |
343 |
acaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaag |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||| | |||||| || ||||| | ||||||||||||||| |
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| T |
10202876 |
acaagtggtttcttgaattgtttccgaaattcccttttcttgagagttttattttaaattcttgtgacatgcctgaaaagattgatatttcaag |
10202969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 458
Target Start/End: Original strand, 49610963 - 49611073
Alignment:
| Q |
348 |
tggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaagtgttcgactta |
447 |
Q |
| |
|
||||||||||| |||||| ||||||||| || ||||||| |||||||| | ||||| ||| |||||| |||| ||||||||||||||| ||||| |
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| T |
49610963 |
tggtttcttgatttgtttttgaaattccctttccttgagatattgaaatttgccaattgcacaatgtctgagacgattaatatttcaagtgttcaactta |
49611062 |
T |
|
| Q |
448 |
agaggttggag |
458 |
Q |
| |
|
|| ||||||| |
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|
| T |
49611063 |
aggtgttggag |
49611073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 458
Target Start/End: Complemental strand, 8552777 - 8552662
Alignment:
| Q |
343 |
acaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaagtgttcg |
442 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| || |||||||| |||||||| | || || ||| |||||| |||| ||||||||||||||| |
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| T |
8552777 |
acaaatggtttcttgaattgttttcgaaattccctttccttgagagattgaaatttgtcaaatgcacaatgtctgagacgattaatatttcaagtgttca |
8552678 |
T |
|
| Q |
443 |
acttaagaggttggag |
458 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
8552677 |
acttaaggtgttggag |
8552662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 8553093 - 8553025
Alignment:
| Q |
23 |
cttttggtagatgaacatgcaatcaaccacctcatctctttttgtcatttgattgaatatataactttg |
91 |
Q |
| |
|
||||||| ||||||||||||||| | || ||||| |||| ||||| ||| |||||| ||||||||||| |
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|
| T |
8553093 |
cttttggaagatgaacatgcaattgagcatctcatttcttgttgtcctttcattgaacatataactttg |
8553025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 458
Target Start/End: Original strand, 5174911 - 5175032
Alignment:
| Q |
337 |
tcaccaacaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaag |
436 |
Q |
| |
|
||||| |||| |||||||||||| ||||||| ||||| || || ||||||||||||||||| || ||||| || | |||| |||| |||||||||| |
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|
| T |
5174911 |
tcaccgacaaatggtttcttgaactgtttcctaaatttcctttccttgagagtttgaaattggacaattgcactatgtccgagaagattaatatttcaag |
5175010 |
T |
|
| Q |
437 |
tgttcgacttaagaggttggag |
458 |
Q |
| |
|
||||| ||||||| ||||||| |
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|
| T |
5175011 |
tgttcaacttaaggtgttggag |
5175032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 458
Target Start/End: Original strand, 6230495 - 6230616
Alignment:
| Q |
337 |
tcaccaacaagtggtttcttgaattgtttccgaaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaag |
436 |
Q |
| |
|
||||| |||| |||||||||||| ||||| ||||| | || ||||||||||||||||| || ||||| ||| | ||||||||| |||||||||| |
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|
| T |
6230495 |
tcaccgacaaatggtttcttgaactgtttagaaaatttcgtttccttgagagtttgaaattggatgattgtacaatggccgagaggattaatatttcaag |
6230594 |
T |
|
| Q |
437 |
tgttcgacttaagaggttggag |
458 |
Q |
| |
|
||||| ||||||| ||||||| |
|
|
| T |
6230595 |
tgttcaacttaaggtgttggag |
6230616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 458
Target Start/End: Original strand, 5170742 - 5170831
Alignment:
| Q |
369 |
aaattcccctttcttgagagtttgaaattagaaaattgtgaaattcctgagaggattgatatttcaagtgttcgacttaagaggttggag |
458 |
Q |
| |
|
|||||||| || |||||||| |||||||| ||||||| |||| | || |||||| ||||||||||||||| ||||||| ||||||| |
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|
| T |
5170742 |
aaattccctttccttgagaggttgaaattgcaaaattgcaaaatgtccgaaaggattaatatttcaagtgttcaacttaaggtgttggag |
5170831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 5203731 - 5203791
Alignment:
| Q |
31 |
agatgaacatgcaatcaaccacctcatctctttttgtcatttgattgaatatataactttg |
91 |
Q |
| |
|
||||||||||||||| | || ||||| |||| ||||| |||||||||| ||||||||||| |
|
|
| T |
5203731 |
agatgaacatgcaattgagcatctcatttcttgttgtcctttgattgaacatataactttg |
5203791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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