View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12080_high_14 (Length: 475)
Name: NF12080_high_14
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 37989992 - 37990444
Alignment:
| Q |
18 |
cattcaacgataaccaactctccggcacaataccagaatcttacggctcatttccgcctctctttaccgggttgcttctctcgcgaaaccgtctctccgg |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37989992 |
cattcaacgataaccaactcaccggcacaataccagaatcttacggctcatttccgcctctctttaccgggttgcttctctcgcgaaaccgactctccgg |
37990091 |
T |
|
| Q |
118 |
gaaggttcctgcgtcactggggaaactaaaccttgctgatgtggacttgtcacataacgcgtttgagggtgatgcgtccatgttttttaagtcggatata |
217 |
Q |
| |
|
|||| |||| || || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37990092 |
gaagattccggcttccctccggaaactgaaccttgctgatgtggacttgtcacataacgcgtttgagggtgatgcgtccatgttttttaagtcaaatata |
37990191 |
T |
|
| Q |
218 |
ctcacttatacgataacattggggagtaattcgtttgcttttgatatttccaaagttgggttatcgaaggatttgaataagttggatataaggcacaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37990192 |
ctcacttatacgataacattggggagtaattcgtttgcttttgatatttcgaaagttgggttatcgaaggatttgaataagttggatataaggcacaata |
37990291 |
T |
|
| Q |
318 |
aaatctatggtaagctaccagagagactctcggagctcaggtatctgcataagttgaacgtgagcgataataatttgtgtggtcagattccaatgaacac |
417 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37990292 |
aaatatatggtaagctaccagagagactctcggagctcaggtatctgcataagttgaacgtgagcgataataatttgtgtggtcagattccaatgaacac |
37990391 |
T |
|
| Q |
418 |
aaggtttgatgcgagttgttatgttcttaataagtgcttctgtgctcctcctc |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
37990392 |
aaggtttgatgcgagttgttatgttcttaataagtgcttgtgtggttctcctc |
37990444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 37994256 - 37994359
Alignment:
| Q |
98 |
tcgcgaaaccgtctctccgggaaggttcctgcgtcactggggaaactaaaccttgctga-tgtggacttgtcacataacgcgtttgagggtgatgcgtcc |
196 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||||| || || |||| || | ||||||||||| ||||||||| |||||||||| || |
|
|
| T |
37994256 |
tcgcgaaaccgtctctccgggaagattccagcgtctctggggaagctgaa-tttgcagattttggacttgtcatggaacgcgtttaagggtgatgcttca |
37994354 |
T |
|
| Q |
197 |
atgtt |
201 |
Q |
| |
|
||||| |
|
|
| T |
37994355 |
atgtt |
37994359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 37994403 - 37994512
Alignment:
| Q |
245 |
aattcgtttgcttttgatatttccaaagttgggttatcgaaggatttgaataagttggatataaggcacaataaaatctatggtaagctaccagagagac |
344 |
Q |
| |
|
||||| |||||||||||| || ||||||| ||| ||||| ||||| |||||||||| | ||| |||||||||||||||||| ||||| ||| ||| |
|
|
| T |
37994403 |
aattcatttgcttttgattttgggaaagttgagttgccgaagaatttgggtaagttggatttgaggaacaataaaatctatggtacactaccggagggac |
37994502 |
T |
|
| Q |
345 |
tctcggagct |
354 |
Q |
| |
|
| ||||||| |
|
|
| T |
37994503 |
taacggagct |
37994512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University