View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_high_16 (Length: 430)
Name: NF12080_high_16
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Complemental strand, 962206 - 961787
Alignment:
| Q |
12 |
acatcatgttcatgcttgtgtctttcgcaatagtaatgcgcattttctttttatcttaaccctccgattcgttagagaaaaatggtcattgtaatatgaa |
111 |
Q |
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| T |
962206 |
acatcatgctcatgctcgtgtcttttgcaatagtaatgcgcattttctttttatcttaaccctccgattcgttagagaaaaaaggtcattgtaatatgaa |
962107 |
T |
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| Q |
112 |
gttcgaccgaaaagtaa-ttaaagtctgattaatgattgtttcagtcagaatttaaactcagattctttcaaatgattcgtacttaactgaagtttgtta |
210 |
Q |
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| T |
962106 |
gttcgactgaaaaataaattaaagtctgattaattattgttttagtcagaatttaaactcaaattcttccaaatgattcatacttaactgaagttcgttg |
962007 |
T |
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| Q |
211 |
gtcagttgaactcaattacttagttgtcaacatgcttaataatacaacttacaccatatactatctttggttatttttaattaattatgaaattgtgcaa |
310 |
Q |
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| T |
962006 |
gtcagttaaactcaatcacttagctgtcttcatgcttaataatacaacttccaccatatactatctttggttatttttaattaattatgaaattgtgcaa |
961907 |
T |
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| Q |
311 |
atttaactggtgttcacattaaatgcgtataagggagtgaaatagtaaaaataggtaccctagtttagtcttcatgttcacaatgtggaatggacacaaa |
410 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
961906 |
atttaactggtgttcacattaaatgtgtataagggagtgaaatagtaaaaataggtaccctagtttagtcttcatgttcacaatgtggaatggacacaaa |
961807 |
T |
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| Q |
411 |
aggaatgtgatgtctttata |
430 |
Q |
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| T |
961806 |
aggaatgtgatgtctttata |
961787 |
T |
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