View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12080_high_2 (Length: 874)

Name: NF12080_high_2
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12080_high_2
NF12080_high_2
[»] chr4 (1 HSPs)
chr4 (16-856)||(53362356-53363196)


Alignment Details
Target: chr4 (Bit Score: 829; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 829; E-Value: 0
Query Start/End: Original strand, 16 - 856
Target Start/End: Original strand, 53362356 - 53363196
Alignment:
Q  16 acatcaagaccttccaaagctgtagccaaatcattggaagaaccatccttagtcttcttaaacccactcacaagctcttgaggtttgttaatggcatcac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53362356 acatcaagaccttccaaagctgtagccaaatcattggaagaaccatccttagtcttcttaaacccactcacaagctcttgaggtttgttaatggcatcac 53362455  T
Q  116 tagccgcaaatggatccttttccacttcaacctcttcctgtttctgcttctgttgaatctcttcattctgttcactggtcaccggagcagcaaggctagc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53362456 tagccgcaaatggatccttttccacttcaacctcttcctgtttctgcttctgttgaatctcttcattctgttcactggtcaccggagcagcaaggctagc 53362555  T
Q  216 caccacttcatcaccggcttcaagcgtctcctgaggcaattcaaatctagcatttgcaaatgcatcaatgctcgcttgatgttcgacggaatgcacctcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53362556 caccacttcatcaccggcttcaagcgtctcctgaggcaattcaaatctcgcatttgcaaatgcatcaatgctcgcttgatgttcgacggaatgcacctcc 53362655  T
Q  316 gcggaagaccaattatccgcaccacggatcttattctctgtatcaattgcagaatgcaccatcttagcaatactatcaccgtgcattgtggcaagcattg 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  53362656 gcggaagaccaattatccgcaccacggatcttattctctgtatcaattgcagaatgcaccatcttagcaatactatcaccgtgcattgtggcaagcatcg 53362755  T
Q  416 cggcaagacggatattgctaacaccacgaagaacaatatcaagtgccatatagatctcggcgtatttccggccgagcttctccggcgtgacgtcaacgcc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53362756 cggcaagacggatattgctaacaccacgaagaacaatatcaagtgccatatagatctcggcgtatttccggccgagcttctccggcgtgacgtcaacgcc 53362855  T
Q  516 acggcaagcggtgacgacgacactaacagcttgattaacaatatgaatgcattcgaaaacattgacggagttatcgtgatcggcgacggttattccaagg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53362856 acggcaagcggtgacgacgacactaacagcttgattaacaatatgaatgcattcgaaaacattgacggagttatcgtgatcggcgacggttattccaagg 53362955  T
Q  616 acgtagattccgttaactaaacgataaacgatgcggtaacggctttcgactccgacgatgacttgaccactggaagcggcgaggggatcgtcaccgatgg 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53362956 acgtagattccgttaactaaacgataaacgatgcggtaacggctttcgactccgacgatgacttgaccactggaagcggcgaggggatcgtcaccgatgg 53363055  T
Q  716 attcggcggcgtaggcgtcttcgggggcgttgtttttgttgttcttggttgcggcgaatgcgcggcgcgtgtgacggaaagcggaaagagcgccgagggc 815  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53363056 attcggcggcgtaggcgtcttcgggggcgttgattttgttgttcttggttgcggcgaatgcgcggcgcgtgtgacggaaagcggaaagagcgccgagggc 53363155  T
Q  816 gcgtgagggtgggaaccactcgcgggtttgaagaaggatat 856  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53363156 gcgtgagggtgggaaccactcgcgggtttgaagaaggatat 53363196  T

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