View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_high_22 (Length: 381)
Name: NF12080_high_22
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 23 - 368
Target Start/End: Original strand, 961472 - 961817
Alignment:
| Q |
23 |
acatttgacaatgaaaatcaactatacactaaagaccattcatgacaccccacctacacatgttctttcaatgactaaatgaataaattttgatctcatg |
122 |
Q |
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| T |
961472 |
acatttgacaatgaaaatcaaccatacactaaagaccattcatgacaccccacctacacatgttctttcaatgactaaatgaataaattttgatctcatg |
961571 |
T |
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| Q |
123 |
tagttttatttccaagttgaataaaagcctcactcatttcaaacctaccnnnnnnntttcattttcatttcatgccttagaaattttagataaggatata |
222 |
Q |
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| T |
961572 |
tagttttatttccaagttgaataaaagcctcactcatttcaaacctaccaaaaaaatttcattttcatttcatgccttagaaattttagataaggatata |
961671 |
T |
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| Q |
223 |
actactcatccatcattagggaaaaaggacaattatgacatagctagcctactactttgactgtcgataagtttaccttaaattgttatatttctgtcat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
961672 |
actactcatccatcattagggaaaaaggacaattattacatagctagcctactactttgactgtcgataagtttaccttaaattgttatatttctgtcat |
961771 |
T |
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| Q |
323 |
tgttgttattgtcattataaagacatcacattcctttgatgtccat |
368 |
Q |
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| T |
961772 |
tgttgttattgtcattataaagacatcacattccttttgtgtccat |
961817 |
T |
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