View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_high_24 (Length: 347)
Name: NF12080_high_24
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 156 - 329
Target Start/End: Original strand, 17598227 - 17598399
Alignment:
| Q |
156 |
ttaacacttattgg-actaaatatgtcttagaaatcaaatttatgattaagatatatgataattgaagtgagagtatagcagaacataagatcgtaaaaa |
254 |
Q |
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| T |
17598227 |
ttaacacttattgggactaaatatgtcttagaaatcaaatttatgattaagatatatgataattgaagtgagagtatagcagaacataagatcgtaaaaa |
17598326 |
T |
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| Q |
255 |
gcttgaattgtccccgtctttcgactaagatccttccttgtatttatatgttgaacttcatattactaaaaccac |
329 |
Q |
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| T |
17598327 |
gctttaattgtccccgtctttcgactaagatccttccttgtatt--tatgttgaacttcatattattaaaaccac |
17598399 |
T |
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Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 17598044 - 17598178
Alignment:
| Q |
21 |
tttggattacattataaactagttattttataattaatcttgtaaaaatctatttcaacttacttattgttataggaatggccaaaattatggatactac |
120 |
Q |
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| T |
17598044 |
tttggattacattataaactaggtattttatagttaatcttgtaaaaatctatttcaacttacttattgttataggaatggccaaaattatggatactac |
17598143 |
T |
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| Q |
121 |
aattccttataatcatatccaatagaagtgaatcctt |
157 |
Q |
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| T |
17598144 |
aattccttataatc--atccaatagaagtgaatcctt |
17598178 |
T |
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