View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_high_30 (Length: 294)
Name: NF12080_high_30
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 46952379 - 46952656
Alignment:
| Q |
1 |
aaagtggatcaaaggaatttactcatatattaattttactgttggaataattttaacttaataggaaataagatttggattacatcgttcagactatatg |
100 |
Q |
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| T |
46952379 |
aaagtggatcaaatgaatttactcatatattaattttactgttggaataattttaacttaataggaaataagatttggattacatcgttcagactatatg |
46952478 |
T |
|
| Q |
101 |
cttgatgaacaaaccaaatcacttttgcaaatagagctcaacactatttcatcttcatttgctggttttagtactcttgtcactcaacttcataggtaaa |
200 |
Q |
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| T |
46952479 |
cttgatgaacaaaccaaatcacttttgcaaatagagctcaacactatttcatcttcatttgctggttttagtactcttgtcactcaacttcataggtaaa |
46952578 |
T |
|
| Q |
201 |
cttttgctttaactctaatttattataatctctgattttctcatacttcctcnnnnnnncctttcttttgcgtcctat |
278 |
Q |
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| T |
46952579 |
cttttgctttaactctaatttattataatctctgattttctcatacttcctctttttttcctttcttttgcgtcctat |
46952656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 46946091 - 46946199
Alignment:
| Q |
58 |
ttaataggaaataagatttggattacatcgttcagactatatgcttgatgaacaaaccaaatcacttttgcaaatagagctcaacactatttcatcttca |
157 |
Q |
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||||||||||||| | | |||||| ||||||||| || |||||||||||| | || || |||||||||||||| ||| | ||||||||||| ||||| |
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| T |
46946091 |
ttaataggaaatacggatgggattatttcgttcagattacatgcttgatgaaaagactaagtcacttttgcaaattgagatgaacactatttccacttca |
46946190 |
T |
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| Q |
158 |
tttgctggt |
166 |
Q |
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||| ||||| |
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| T |
46946191 |
ttttctggt |
46946199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 32541900 - 32541851
Alignment:
| Q |
118 |
atcacttttgcaaatagagctcaacactatttcatcttcatttgctggtt |
167 |
Q |
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|||||||||||||||| || ||| |||||||||||||||||||||||||| |
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| T |
32541900 |
atcacttttgcaaatatagttcatcactatttcatcttcatttgctggtt |
32541851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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