View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_high_33 (Length: 269)
Name: NF12080_high_33
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 43336176 - 43335916
Alignment:
| Q |
1 |
gttctttgatattcaacaacatattctaaatgaaggttatttaatgttaaaagaatgtccacgtgtctttatttgatttgatagtttgatgataatgatg |
100 |
Q |
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| T |
43336176 |
gttctttgatattcaacaacatattctaaatgaaggttatttaatgttaaaagaatgtccacgtgtctttatttgatttgatagtttgatgataatgata |
43336077 |
T |
|
| Q |
101 |
taaggaactttatccaaattttatcctaatattggtgtgttttttcttactaagatttgttcattagtttttatacgtgccatatcgaattatctgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43336076 |
taaggaactttatccaaattttatcctaatattggtgtgttttttcttactaagatttgttcattagtttttatacgtgccatatcgaattatctgattc |
43335977 |
T |
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| Q |
201 |
tgtttgcaggcacttgatatgatacagggaaaaaacaacatgctcttgatggattctcatt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43335976 |
tgtttgcaggcacttgatatgatacagggaaaaaacaacatgctcttgatggattctcatt |
43335916 |
T |
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