View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12080_high_7 (Length: 613)
Name: NF12080_high_7
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 134 - 598
Target Start/End: Original strand, 31112954 - 31113421
Alignment:
| Q |
134 |
gagagtaatatttgaataatgttgcatttatttaagattttaatgattttatgaaatgtgttgtaaccatgtttcaattatgtatctggtgacactgcag |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31112954 |
gagagtaatatttgaataatgttgcatttatttaagattttaatgattttatgaaatgtgttgtaaccatgtttcaattatgtatctggtgacactgcag |
31113053 |
T |
|
| Q |
234 |
gaaacaagcgttgctaaaatggcagaaagcaagctacaagagaacttgaaaaaattgcaggtatcttcttttttatataaaacactcgatattttatcat |
333 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31113054 |
gaaacaagcgctgctaaaatggcagaaagcaagctacaagagaacttgaaaaaattgcaggtatcttcttttttatataaaacacacgatattttatcat |
31113153 |
T |
|
| Q |
334 |
agcctaaactacagtgctgcaaaatgtgtcatatcaaatttgtttgatacatc--taaacattttctgatttgtcagggtatcaacttaagaactacaga |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31113154 |
agcctaaactacagtgctgcaaaatgtgtcatatcaaatttgtttgatgcatctataaacattttctgatttgtcagggtatcaacttaagaactacaga |
31113253 |
T |
|
| Q |
432 |
aatgcaagatacagcaaaatcattttcatcaatggcaaaccaagtactgcgaactgctgaacagcaacaagacaaaagaagttgattaacaaattcaatt |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31113254 |
aatgcaagatacagcaaaatcattttcatcaatggcaaaccaagtactgcgaactgctgaacagcaacaagacaaaagaagttgattaac-aattcaatt |
31113352 |
T |
|
| Q |
532 |
ca-ttttttactaagatgtgaa-nnnnnnnngtttatattttgtatgtaaggtggttctgtttcttttt |
598 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31113353 |
catttttttactaagatgtgaatttttttttgtttatattatgtatgtaaggtggttctgtttcttttt |
31113421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 31112743 - 31112874
Alignment:
| Q |
5 |
gagatgaagggtaacatccagaaaacatcagctaaagaagagcaacaacaagaagagcaacctgctactgtcgaccaaatcaagaagagatacggatttt |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31112743 |
gagatgaagggcaacatccagaaaacatcagctaaagaagagcaacaacaagaagagcaacctgctactgtcgaccaaatcaagaagagatacggatttt |
31112842 |
T |
|
| Q |
105 |
cttcttcctctaatgtaagtatatagccagag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31112843 |
cttcttcctctaatgtaagtatatagccagag |
31112874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 495
Target Start/End: Complemental strand, 9705981 - 9705926
Alignment:
| Q |
440 |
atacagcaaaatcattttcatcaatggcaaaccaagtactgcgaactgctgaacag |
495 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| || | || |||||||||| |
|
|
| T |
9705981 |
atacagcaaaatcatttttatcaatggcaaaacaagtgcttcaaaatgctgaacag |
9705926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 9706212 - 9706175
Alignment:
| Q |
231 |
caggaaacaagcgttgctaaaatggcagaaagcaagct |
268 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
9706212 |
caggaaacaagggttgctaaattggcagaaagcaagct |
9706175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University