View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_high_9 (Length: 580)
Name: NF12080_high_9
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 70 - 562
Target Start/End: Complemental strand, 9071238 - 9070749
Alignment:
| Q |
70 |
catattactttgatcatgcaacttcttatgatcttgcttatcagaagtggcaatgctcatgaccagtgcagagaatcatattgtggacctgaccaacctc |
169 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9071238 |
catactactttgatcatgcaacttcttatgatcttgcttatcaaaagtggcaatgctcatgaccagtgcagagaatcatattgtggacctaaccaacctc |
9071139 |
T |
|
| Q |
170 |
ttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaac |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071138 |
ttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaa---tgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaac |
9071042 |
T |
|
| Q |
270 |
catgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgc |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071041 |
catgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgc |
9070942 |
T |
|
| Q |
370 |
cttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaactgctcttcag |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| |
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| T |
9070941 |
cttccaaaaaagtttttgatactcaacaattcatcatttcgaccttaccggtttgattctgaactggatatcaaaatcttcttcttcaactgcttttcag |
9070842 |
T |
|
| Q |
470 |
ttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaag |
562 |
Q |
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| T |
9070841 |
ttaggaaacaacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaag |
9070749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 181 - 542
Target Start/End: Complemental strand, 8862986 - 8862628
Alignment:
| Q |
181 |
cccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttc |
280 |
Q |
| |
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||||||||| | ||| |||||||||||||||||||| ||| | ||||| ||||| |||||||||||||||||||| ||| |||||||||| || | |
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| T |
8862986 |
cccttccaactagttgaggaatcatcacaagatcaa---tgtactcatcct---gagttttgcctatattgtactgaaaacaaggaaaccatgatggtcc |
8862893 |
T |
|
| Q |
281 |
tctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgccttccaaaaaa |
380 |
Q |
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| T |
8862892 |
tctctaccacttcaggtccaatcaaattccgtgtatattacatagactacgaatcaaaccgaatttcagtgatggacccggacaattgcattcctaaaaa |
8862793 |
T |
|
| Q |
381 |
gtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatat--caaaatgttctt-cttcaactgctcttcagttaggaaa |
477 |
Q |
| |
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|||| ||| ||| ||||| |||||||||| ||||||||| ||| | | |||| | | |||||| |||| |||||| |||||||||||||||||| |
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| T |
8862792 |
gtttctgaaacttaacaactcatcatttctaccttaccgattttttccacaaccaggaacgacaaaattgtctttcttcaattgctcttcagttaggaaa |
8862693 |
T |
|
| Q |
478 |
cgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
542 |
Q |
| |
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| ||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||| |||| |
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| T |
8862692 |
caacacttgagaaaccatgatcaaacatcccaagagtcgcaagatatgatcacctgtccagttta |
8862628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 134 - 542
Target Start/End: Complemental strand, 8866899 - 8866497
Alignment:
| Q |
134 |
agtgcagagaatcatattgtggacctgaccaacctcttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaa |
233 |
Q |
| |
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|||||||||||| | ||||||||| || |||| ||||| ||| ||||||||| | |||||||||||||||||| || || |||||||||||| |
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| T |
8866899 |
agtgcagagaattgtcatgtggaccttacgaaccgattattcgattccccttccaacttgttaaggaatcatcacaacatgaa---tgtgtttatcct-- |
8866805 |
T |
|
| Q |
234 |
agagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaa |
333 |
Q |
| |
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||||| ||||||||||||||| |||| ||||| |||||||| || | |||||| ||||||||||| ||| |||| ||| | | || ||||||||| |
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| T |
8866804 |
-gagttttgcctatattgtactcaaaacaagaacaccatgatggtgttatctaccacttcaggtccattcatattctttgtagattacatagactacgaa |
8866706 |
T |
|
| Q |
334 |
tcacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaac |
433 |
Q |
| |
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||| || | ||||| || ||||||||||||||| || | |||| || ||| ||| ||||| | ||||||| ||||||||| ||| |||| ||| |
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| T |
8866705 |
tcaaaccaactttcaatttcggacccagacaattgcatttcggaaaaaattctgaaacttaacaagacctcatttccaccttaccgattttattcagaat |
8866606 |
T |
|
| Q |
434 |
cggatatcaaaatgttc-ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcactt |
532 |
Q |
| |
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| ||| |||||| || |||||||| || |||||| ||| |||||||||| |||||||| || |||| |||| ||| |||||||||||||||||| | |
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| T |
8866605 |
c-aataacaaaatcatctttcttcaattgttcttcatttaagaaacgacacctgagaaacgaagatcaatcatctcaacggtcacaagatatgatcacct |
8866507 |
T |
|
| Q |
533 |
gtccaattta |
542 |
Q |
| |
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|||||||||| |
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| T |
8866506 |
gtccaattta |
8866497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 184 - 309
Target Start/End: Complemental strand, 9087427 - 9087308
Alignment:
| Q |
184 |
ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctct |
283 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||| ||||||||| ||||||||| || |||| |
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| T |
9087427 |
ttccaactcgttaaggaatcatcacaagatcaa---tgtgtttatcct---gagttttgcttatattgtactaaaaataagagaaccatgattgtgctct |
9087334 |
T |
|
| Q |
284 |
ctacctcttcaggtccaatcaaattc |
309 |
Q |
| |
|
|| || ||||||||||||||||||| |
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| T |
9087333 |
cttccaattcaggtccaatcaaattc |
9087308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 542
Target Start/End: Complemental strand, 9087154 - 9087066
Alignment:
| Q |
454 |
ttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
542 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||| |
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|
| T |
9087154 |
ttcaactgctcttcggttaagaaacgacatttgagaaaccaatatcagataaacaaagattcacaagatatgatcacttgtccaattta |
9087066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 449 - 554
Target Start/End: Complemental strand, 9126305 - 9126200
Alignment:
| Q |
449 |
tcttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgc |
548 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| | |||| || ||||| |||||||||||||||||| ||||||||||| | ||| |
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| T |
9126305 |
tcttcttcaactgctcttcggttaggaaacgacacctgagaaactacgatcaattattccaagggtcacaagatatgatcacatgtccaatttacgctgc |
9126206 |
T |
|
| Q |
549 |
tgattc |
554 |
Q |
| |
|
|||||| |
|
|
| T |
9126205 |
tgattc |
9126200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 542
Target Start/End: Complemental strand, 8980134 - 8980043
Alignment:
| Q |
451 |
ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
542 |
Q |
| |
|
||||| ||||||||||| ||| |||||| |||| ||||||||||| ||||| ||| |||| ||| |||| ||||||| || ||||||||||| |
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|
| T |
8980134 |
ttctttaactgctcttctgttgggaaacaacacctgagaaaccaagatcagtcattccaaaagttacaaaatatgattacctgtccaattta |
8980043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 486
Target Start/End: Complemental strand, 9109116 - 9108990
Alignment:
| Q |
359 |
cagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaa |
458 |
Q |
| |
|
||||||||||||||| ||||| |||||| || ||||||| |||||||||| ||||||| | ||| |||| ||| | |||| | ||| | ||||| ||| |
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| T |
9109116 |
cagacaattgccttcaaaaaatgttttt-atgctcaacagttcatcattttgaccttacagattttattcagaatcaaatataataatttccttctccaa |
9109018 |
T |
|
| Q |
459 |
ctgctcttcagttaggaaacgacacttg |
486 |
Q |
| |
|
|||||||||||||| |||||| |||||| |
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| T |
9109017 |
ctgctcttcagttaagaaacggcacttg |
9108990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 9126561 - 9126479
Alignment:
| Q |
184 |
ttccaaatcgttaaggaatcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgat |
275 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||| |
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| T |
9126561 |
ttccaactcgttaaggaatcatcacaagat---caatgtgtttatcct---gagttttgcctgtattgtac---aaatcagaaaaccatgat |
9126479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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