View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12080_low_11 (Length: 530)
Name: NF12080_low_11
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_11 |
 | |
|
| [»] chr3 (27 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] chr2 (1 HSPs) |
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|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 51 - 530
Target Start/End: Complemental strand, 10263115 - 10262636
Alignment:
| Q |
51 |
aagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtaga |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
10263115 |
aagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattctcacaatttacaatttcaagtgattgcaatgaagtgggtaga |
10263016 |
T |
|
| Q |
151 |
ccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaa |
250 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10263015 |
ccacttgagggaaatgtagtgagagaaggaagagaactgagtttcaagtgtgttagacaagtgcttctcagaatcaattttggaacagctaataacttaa |
10262916 |
T |
|
| Q |
251 |
cacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaattttctt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10262915 |
cacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaattttctt |
10262816 |
T |
|
| Q |
351 |
tactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgactaggcaaa |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
10262815 |
tactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttattacaatttcttctatgcaaggaagtttgctaggcaaa |
10262716 |
T |
|
| Q |
451 |
tgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaag |
530 |
Q |
| |
|
||| || |||||| ||||||||| |||||| |||||||| |||| ||||||||| | ||||||||||||| ||||||| |
|
|
| T |
10262715 |
tgttcccttagttctggacaattatgtaactccatagctctaagtcgaggaaaagaaagttttatgccttcatagggaag |
10262636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 51 - 530
Target Start/End: Complemental strand, 10583025 - 10582548
Alignment:
| Q |
51 |
aagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtaga |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
10583025 |
aagactcacaagtgatgtgtagttgctccacgtttcaggaggtaggaaggataaattctcacaattttcgatatgaagtgattgcaatgaagtgggtaga |
10582926 |
T |
|
| Q |
151 |
ccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaa |
250 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10582925 |
ccacttgagggaaatgtagtgagagaagaaagagaatagagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggcacagctaataggttaa |
10582826 |
T |
|
| Q |
251 |
cacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaattttctt |
350 |
Q |
| |
|
| || | || ||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| || |||||||| || |
|
|
| T |
10582825 |
cgcagtttgccatcactgcatcttgcatcatacacggagaatcactctcaagcaataacaattgggtcctttcaccaagcccatcaatcttaattttttt |
10582726 |
T |
|
| Q |
351 |
t-actgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgactaggcaa |
449 |
Q |
| |
|
| | |||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
10582725 |
ttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgaacacaaccttctatttcaatttcttctatgcaaggaagatggctaggcaa |
10582629 |
T |
|
| Q |
450 |
atgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaag |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
10582628 |
atgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcaaattgtatgccttcaaagggaag |
10582548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 45 - 530
Target Start/End: Complemental strand, 10198096 - 10197611
Alignment:
| Q |
45 |
taaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtg |
144 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||| |||| |||||||||||||||| |
|
|
| T |
10198096 |
taaataaagtctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgcaatgaagtg |
10197997 |
T |
|
| Q |
145 |
ggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaata |
244 |
Q |
| |
|
||||||||||||||||| ||||| | || ||| | |||||||| ||||| ||||||| ||||||||||||||| |||||| |||||| | |||||||| |
|
|
| T |
10197996 |
ggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgcttcttggaatcatttttggcatagctaata |
10197897 |
T |
|
| Q |
245 |
acttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaat |
344 |
Q |
| |
|
|||| |||| | ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
10197896 |
gcttagcacactttcgaatcactacatcttccatcatacacggagaatcactctcaagcaatgacaattgggtcctttcaccaaacccatcgatattaat |
10197797 |
T |
|
| Q |
345 |
tttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgacta |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||| |
|
|
| T |
10197796 |
tttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttattacaatttcttttatgcaaggaaggttgcta |
10197697 |
T |
|
| Q |
445 |
ggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaag |
530 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
10197696 |
ggcaaatgtccccttagttctcgacaattacgtaactccatagctctaagtcgaggaaaagcaaattttatgccttcatagggaag |
10197611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 44 - 529
Target Start/End: Original strand, 10373490 - 10373975
Alignment:
| Q |
44 |
ataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagt |
143 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| | | ||| |||||||||||||||||||| |
|
|
| T |
10373490 |
ataaataaagccacacaagtgatgtgtaattgctccacatttcaagaggaaggaaggataaattctcacagtatctaatttcaagtgattgcaatgaagt |
10373589 |
T |
|
| Q |
144 |
gggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373590 |
gggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaat |
10373689 |
T |
|
| Q |
244 |
aacttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttcca---tcaagcccatcgatat |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||||| ||||| |
|
|
| T |
10373690 |
aacttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacagttgggaactttcactctcaagcccattgatat |
10373789 |
T |
|
| Q |
341 |
taattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatg |
440 |
Q |
| |
|
| |||| |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| | |
|
|
| T |
10373790 |
tcatttcttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaaggtt |
10373886 |
T |
|
| Q |
441 |
actaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaa |
529 |
Q |
| |
|
| |||||||||||| |||||| |||||||||||||||| ||||| |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
10373887 |
ggtgggcaaatgtccccttagttctggacaattacgtaactctatagccttaagtcgaggaaaagcaaattttatgccttcaaagggaa |
10373975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 33 - 527
Target Start/End: Original strand, 10431678 - 10432172
Alignment:
| Q |
33 |
acaacttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgat |
132 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
10431678 |
acaactgctccataaataaagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatttcaagtgat |
10431777 |
T |
|
| Q |
133 |
tgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttg |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10431778 |
tgcaatgaagtgggtagaccacttgatggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttg |
10431877 |
T |
|
| Q |
233 |
gaacagctaataacttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagccc |
332 |
Q |
| |
|
| ||| |||||| ||||||||| | ||| ||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
10431878 |
gcacaactaatagcttaacacagttttcaatcactacatgttgcatcatacacggagaatcactctcaagcaatgacaaattggtccttccgtcaagccc |
10431977 |
T |
|
| Q |
333 |
atcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaa |
432 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
10431978 |
attgatattaactttctttattgacgacaaccaatgcatagtgtttggctctgtttccagtagttgagaacaacctgatatatcaatttcttctatgcaa |
10432077 |
T |
|
| Q |
433 |
ggaagatgactaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaaggg |
527 |
Q |
| |
|
||||| | |||||||| |||||| |||||| ||||||||| |||||| |||| ||| |||| |||||||||| | |||||||||||||||||| |
|
|
| T |
10432078 |
ggaaggttgctaggcaattgtccccttagttcaggacaattatgtaactccataactctaagtcgaggaaaagcaacttttatgccttcaaaggg |
10432172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 45 - 530
Target Start/End: Complemental strand, 10091214 - 10090728
Alignment:
| Q |
45 |
taaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtg |
144 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||| |||| |||||||||||||||| |
|
|
| T |
10091214 |
taaataaagtctcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattcaaacaaaattcaatttcaattgattgcaatgaagtg |
10091115 |
T |
|
| Q |
145 |
ggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaata |
244 |
Q |
| |
|
||||||||||||||||| ||||| | || ||| | |||||||| ||||| ||||||| ||||||||||||||| |||||| |||||| | |||||||| |
|
|
| T |
10091114 |
ggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacaagtgcttcttggaatcatttttggcatagctaata |
10091015 |
T |
|
| Q |
245 |
acttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaat |
344 |
Q |
| |
|
|||| |||| | ||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
10091014 |
gcttagcacactttcgaatcactacatcttccatcatacatggagaatcactctcaagcaatgacaattgggtcctttcaccaaacccatcgatattaat |
10090915 |
T |
|
| Q |
345 |
tttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgacta |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||| |
|
|
| T |
10090914 |
tttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacaaccttttattacaatttcttttatgcaaggaaggttgcta |
10090815 |
T |
|
| Q |
445 |
ggcaaatgtccctttagtttgggacaattacgt-aacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaag |
530 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||| |||||||| |||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
10090814 |
ggcaaatgtccccttagttctcgacaattacgtgtactccatagctctaagtcgaggaaaagcaaattttatgccttcatagggaag |
10090728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 51 - 529
Target Start/End: Complemental strand, 10519899 - 10519424
Alignment:
| Q |
51 |
aagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtaga |
150 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
10519899 |
aagactcacaagtgatgtgtaattgatccacgtttcaggaggaaggaaggataaattctcacaacattgaatattaagtgattgcaatgaagtgggtaga |
10519800 |
T |
|
| Q |
151 |
ccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| |
|
|
| T |
10519799 |
ccacttgagggaaatgcagtgagagaagaaagagaatcgagtcccaagtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagcttaa |
10519700 |
T |
|
| Q |
251 |
cacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaattttctt |
350 |
Q |
| |
|
|||| | ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||||| |||||| ||||| || |
|
|
| T |
10519699 |
cacactttttaatctctacatcttgcatcatacaaggagaatcactctcaagcaatgacaattgggaactttcaccaagcccattgatattcattttttt |
10519600 |
T |
|
| Q |
351 |
tactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgactaggcaaa |
450 |
Q |
| |
|
|| ||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||| | | |||||| |
|
|
| T |
10519599 |
tattgaagacaaccaatgcaaagtagatgg---tgtttccaatagatgaacacaaccttttattacaatttcttctatggaaggaaggttggtgggcaaa |
10519503 |
T |
|
| Q |
451 |
tgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaa |
529 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
10519502 |
tgtccccttagttctggacaattacgtaactttatagccttaagttgaggaaaagcaaattttatgccttcgaagggaa |
10519424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 45 - 529
Target Start/End: Original strand, 10361450 - 10361931
Alignment:
| Q |
45 |
taaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtg |
144 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
10361450 |
taaatgtagagtcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaattttcaatatgaagtgattgcaatgaagtg |
10361549 |
T |
|
| Q |
145 |
ggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaata |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | |||| ||||| |||||||||||||||||||||||||||||||||| |||| | | | |
|
|
| T |
10361550 |
ggtagaccacttgagggaaatgcagtgagagaagaaagattaccgagtcccaagagtgtaagacaagtgcttctcagaatcaattttggcacagatgaca |
10361649 |
T |
|
| Q |
245 |
acttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaat |
344 |
Q |
| |
|
| || | || | |||| ||| | | |||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
10361650 |
gcatagcgcacttttgaatcactgcatgttgcatcatacatggagaatcgctcccaagaaatgacaattgggtccttccatcaagcccatcaatcttaaa |
10361749 |
T |
|
| Q |
345 |
tttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgacta |
444 |
Q |
| |
|
|| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | || |
|
|
| T |
10361750 |
attttttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgagaacaaccttgtattacaatttcttctatgcaaggaaggttgctc |
10361846 |
T |
|
| Q |
445 |
ggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaa |
529 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10361847 |
ggcaaatgtccccttagttctggacaattatgtaactccatagctctaagttgaggaaaagcacattttatgccttcaaagggaa |
10361931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 42 - 529
Target Start/End: Complemental strand, 9841281 - 9840800
Alignment:
| Q |
42 |
ccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaa |
141 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||||| |||||||||||||||| |
|
|
| T |
9841281 |
ccataactgaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaactacgaatatgaagtgattgcaatgaa |
9841182 |
T |
|
| Q |
142 |
gtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagcta |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9841181 |
gtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtgcttctcagaatcaattttggaacaacta |
9841082 |
T |
|
| Q |
242 |
ataacttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatatt |
341 |
Q |
| |
|
||| |||||||| | ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||||| |||||| |
|
|
| T |
9841081 |
atagtttaacacacttttcaatcactacatcttgcatcatacatggagaatcactctcaagcaatgacaattgggaactttcaccaagcccattgatatt |
9840982 |
T |
|
| Q |
342 |
aattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatga |
441 |
Q |
| |
|
||||| |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||| ||||||| ||||||| | |
|
|
| T |
9840981 |
cattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaattttttctatggaaggaaggttg |
9840885 |
T |
|
| Q |
442 |
ctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaa |
529 |
Q |
| |
|
| ||||||| |||| |||||| |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9840884 |
gtgggcaaatatccccttagttctggacaattgcgtaactctatagccttaagttgaggaaaagc---atttatgccttcaaagggaa |
9840800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 33 - 529
Target Start/End: Complemental strand, 10129357 - 10128864
Alignment:
| Q |
33 |
acaacttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgat |
132 |
Q |
| |
|
|||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
10129357 |
acaactactccgtaaatcaatactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgat |
10129258 |
T |
|
| Q |
133 |
tgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttg |
232 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10129257 |
tgcaatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagagaatagagtctcaagtgtgtaagacaagtgcttttcagaatcaattttg |
10129158 |
T |
|
| Q |
233 |
gaacagctaataacttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagccc |
332 |
Q |
| |
|
| |||||||||| |||| ||| | |||| |||| | |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
10129157 |
gcacagctaatagcttagaacagttgtgaatcgctacatgttgcatcatacacggagaatcactctcaagcaatgacaattgggaactttcaccaagccc |
10129058 |
T |
|
| Q |
333 |
atcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaa |
432 |
Q |
| |
|
|| |||||| ||||| |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
10129057 |
attgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttctatggaa |
10128961 |
T |
|
| Q |
433 |
ggaagatgactaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaa |
529 |
Q |
| |
|
||||| | | |||||||||||| |||||| |||||||| | ||||| ||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10128960 |
ggaaggttggtgggcaaatgtccccttagttctggacaattccataactctatagccttaagttgaggaaaagcaaattttatgccttcaaagggaa |
10128864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 50 - 529
Target Start/End: Complemental strand, 9852154 - 9851678
Alignment:
| Q |
50 |
gaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtag |
149 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9852154 |
gaagactcacaagtgatgtgtagttgctccatgtttcaggaggtaggaaggataaattctcacaattttcaatatcaagtgattgcaatgaagtgggtag |
9852055 |
T |
|
| Q |
150 |
accacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataactta |
249 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||| |||| |||| |||||||||||||||||||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
9852054 |
accacttgatggaaatgcattgagagaagaaagtgaatcgagtctcaagtgtgtaagacaagtgcttctcataatcaattttggcacagctaatagctta |
9851955 |
T |
|
| Q |
250 |
acacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaattttct |
349 |
Q |
| |
|
||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||||| ||||| | |
|
|
| T |
9851954 |
acacacttttcaatctctacatcttgcatcatacacggagaatcactctcaagcaatgacaattgggaactttcaccaagcccattgatattcatttttt |
9851855 |
T |
|
| Q |
350 |
ttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgactaggcaa |
449 |
Q |
| |
|
||| ||| ||||||||| ||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| | | ||||| |
|
|
| T |
9851854 |
ttattgaagacaaccaacgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaaggttggtgggcaa |
9851758 |
T |
|
| Q |
450 |
atgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaa |
529 |
Q |
| |
|
|| |||| ||||||| ||||||| |||||||| || || ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9851757 |
atatccccttagttttggacaatcacgtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaagggaa |
9851678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 45 - 529
Target Start/End: Complemental strand, 10034423 - 10033939
Alignment:
| Q |
45 |
taaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtg |
144 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
10034423 |
taaataaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacattttacaatatgaagtgattgcaatgaagtg |
10034324 |
T |
|
| Q |
145 |
ggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaata |
244 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
10034323 |
ggtagtccacttgagggaaatgcagtgagagaagaaagagaattgagttccaagtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaata |
10034224 |
T |
|
| Q |
245 |
acttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttcca---tcaagcccatcgatatt |
341 |
Q |
| |
|
|||| ||| | |||| |||| | |||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||||| |||||| |
|
|
| T |
10034223 |
gcttagaacagttgtgaatcgctacatgttgcatcatacacggagaatcactctcaagcaatgacagttgggaactttcactctcaagcccattgatatt |
10034124 |
T |
|
| Q |
342 |
aattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatga |
441 |
Q |
| |
|
||||| |||| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||| ||||||| ||||||| | |
|
|
| T |
10034123 |
cattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaattttttctatggaaggaaggttg |
10034027 |
T |
|
| Q |
442 |
ctaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaa |
529 |
Q |
| |
|
| |||||||||||| |||||| ||||||||| ||||| ||||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
10034026 |
gtgggcaaatgtccccttagttctggacaattatataactctatagccttaagtcgaggaaaagcacattttatgccttcaaagggaa |
10033939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 33 - 529
Target Start/End: Original strand, 11779619 - 11780112
Alignment:
| Q |
33 |
acaacttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgat |
132 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||| || |||||||| |||| ||| ||||| ||||||| |
|
|
| T |
11779619 |
acaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgat |
11779718 |
T |
|
| Q |
133 |
tgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
11779719 |
tgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaaatgcttctcaaaatcaattttg |
11779818 |
T |
|
| Q |
233 |
gaacagctaataacttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagccc |
332 |
Q |
| |
|
| ||| || ||| || | |||| | ||| ||||| | |||||||||| | |||||||||| ||||||||||||||||| ||| || || |||| || |
|
|
| T |
11779819 |
gcacaactgatagctcagcacacttttcaatcactacatgttgcatcatagatagagaatcactatcaagcaatgacaattgtgtcttttcaccaagtcc |
11779918 |
T |
|
| Q |
333 |
atcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaa |
432 |
Q |
| |
|
| |||||| |||| |||| ||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
11779919 |
tttgatattcatttcttttattgacgacaaccaatgcaaagtagatgg---tttttccaatagatgagaacaaccttttattacaatttcttcgatgcaa |
11780015 |
T |
|
| Q |
433 |
ggaagatgactaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaa |
529 |
Q |
| |
|
||||| | |||||||||||||| |||||| ||||||||||| |||| ||||| | ||| ||||||| || |||||||| ||||||||||||| |
|
|
| T |
11780016 |
ggaaggttggtaggcaaatgtccccttagttcaggacaattacgcaactccatagttttgagtcgaggaaatgcaaattttataccttcaaagggaa |
11780112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 33 - 530
Target Start/End: Complemental strand, 11771666 - 11771172
Alignment:
| Q |
33 |
acaacttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgat |
132 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||| ||| || |||||||| |||| ||| ||||| |||| | |
|
|
| T |
11771666 |
acaactactccataaataaagactcacaagtgaagtgtaatagctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtatt |
11771567 |
T |
|
| Q |
133 |
tgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttg |
232 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
11771566 |
tgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaagtgcttctcaaaatcaattttg |
11771467 |
T |
|
| Q |
233 |
gaacagctaataacttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagccc |
332 |
Q |
| |
|
| ||| || ||| || |||| | | ||| ||||| | |||||||||| | |||||||||| |||||||||||||| || ||| || || |||| || |
|
|
| T |
11771466 |
gcacaactgatagctcaacatacttttcaatcactacatgttgcatcatagatagagaatcactatcaagcaatgacaactgtgtcttttcaccaaggcc |
11771367 |
T |
|
| Q |
333 |
atcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaa |
432 |
Q |
| |
|
| |||||| |||| |||| ||||||||||||||||||||| ||| | ||||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
11771366 |
gttgatattcatttcttttattgacgacaaccaatgcaaagtagatgg---tttttccaatagatgagaacaacctttgattacaatttcttcgatgcaa |
11771270 |
T |
|
| Q |
433 |
ggaagatgactaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaag |
530 |
Q |
| |
|
||||| | |||| |||||| || |||||| ||||||||||| |||| ||||| | ||| |||||||||| |||||||| |||||||| ||||| |
|
|
| T |
11771269 |
ggaaggttggtaggaaaatgtacccttagttcaggacaattacgcaactccatagttttgagtcgaggaaaagcaaattttataccttcaaaaggaag |
11771172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 10665888 - 10665698
Alignment:
| Q |
43 |
cataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaag |
142 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||| ||||||||||||||||| |
|
|
| T |
10665888 |
cataaatctagacgcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaccacaaaatattaagtgattgcaatgaag |
10665789 |
T |
|
| Q |
143 |
tgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttgg |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10665788 |
tgggtagaccacttgagggaaatgcagtgagagaagaaagtgaatagagtgccaagtgtgtaagacaagtgcttctcataatcaattttgg |
10665698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 40 - 429
Target Start/End: Complemental strand, 10503007 - 10502622
Alignment:
| Q |
40 |
ctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatg |
139 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||| |||| |||||| ||||| | |
|
|
| T |
10503007 |
ctccataaatcaagactcacaagcaatgtgtaattgctccacgtttcagcaggaagaaaggataaattctcacaccttttaatactaagtgactgcaaag |
10502908 |
T |
|
| Q |
140 |
aagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagc |
239 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||| |||| | || ||||||||||||| ||||||||||||||||| ||||| |||||||| || |
|
|
| T |
10502907 |
aagtgggtagaccatctttgggaaacacagtgagagatggaatatcatagagttccaagtgttgaagacaagtgcttctca-aatcatttttggaataga |
10502809 |
T |
|
| Q |
240 |
taataacttaacacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgata |
339 |
Q |
| |
|
||||| | ||||||| || ||| ||||| | |||||||||||| ||||| |||||| |||||||||| ||||| ||| || || ||||||||| |||| |
|
|
| T |
10502808 |
taatagcgtaacacacctacaaatgactacatgttgcatcatacatggagagtcactcccaagcaatgataattgagtcttttcaccaagcccattgata |
10502709 |
T |
|
| Q |
340 |
ttaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatg |
429 |
Q |
| |
|
||| ||| || | |||||||| ||||||||||| | ||| ||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
10502708 |
ttaccttttttcaatgacgacagccaatgcaaag---taggcggtgtttccaatagatgagcacaaccttctattacaatttcttctatg |
10502622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 327 - 529
Target Start/End: Complemental strand, 10665658 - 10665465
Alignment:
| Q |
327 |
aagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttct |
426 |
Q |
| |
|
|||||||| ||| |||| ||| |||| |||||||||||||||||||||| || ||||||| |||||| || |||| ||| ||||||||||| |
|
|
| T |
10665658 |
aagcccattgattttaactttttttattgacgacaaccaatgcaaagtg---ggacctgtttctaatagacga------ccttcaatttcaatttcttct |
10665568 |
T |
|
| Q |
427 |
atgcaaggaagatgactaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagg |
526 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||| |||| |||||||||| ||||||||||||||||||| |
|
|
| T |
10665567 |
atacaaggaagatggctaggcaaatgtccctttagttttggacaattacgtaactccatggctctaagtcgaggaaaagcaaattttatgccttcaaagg |
10665468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 51 - 327
Target Start/End: Original strand, 13853116 - 13853392
Alignment:
| Q |
51 |
aagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtaga |
150 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||||||||||||| ||| || ||| |
|
|
| T |
13853116 |
aagactcgcaagcgatgtgtaattgctccatgtttcaggaggaaggaatgataaattctcacatttttctatttcaagtgattgcaatggagttggcaga |
13853215 |
T |
|
| Q |
151 |
ccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaa |
250 |
Q |
| |
|
|||||||| |||||| |||||||||| |||| | || ||||| ||||||| |||| |||||||||||| |||||||||||| | || | | | | ||| |
|
|
| T |
13853216 |
ccacttgacggaaatacagtgagagatggaatatcatagagtttcaagtgttgaagaaaagtgcttctcaaaatcaattttggcatagatgacagcataa |
13853315 |
T |
|
| Q |
251 |
cacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatca |
327 |
Q |
| |
|
|||| | ||| ||| | | ||||||| | || |||||||| ||| |||| |||||||||||||||||||||||| |
|
|
| T |
13853316 |
cacacttttcaatcactgcatgttgcatcgtgcaaggagaatcgctcccaagaaatgacaattgggtccttccatca |
13853392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 326 - 530
Target Start/End: Complemental strand, 10186519 - 10186318
Alignment:
| Q |
326 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
425 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||| |||||||| |||||| ||| ||| |||||||||| | ||| |||||||| | ||||||||| |
|
|
| T |
10186519 |
caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtatccaatagattcgcacaaccttttatcataatttcttc |
10186423 |
T |
|
| Q |
426 |
tatgcaaggaagatgactaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaag |
525 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||||||| ||||||| | ||||| ||||| || |||| |||||||| | || ||||| ||||||||| |
|
|
| T |
10186422 |
tatgcaaggaaggtcactaggcaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttattccttcaaag |
10186323 |
T |
|
| Q |
526 |
ggaag |
530 |
Q |
| |
|
||||| |
|
|
| T |
10186322 |
ggaag |
10186318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 530
Target Start/End: Complemental strand, 10079549 - 10079348
Alignment:
| Q |
326 |
caagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttc |
425 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||| |||||||| |||||| ||| |||||||||||||| | ||| |||||||| | ||||||||| |
|
|
| T |
10079549 |
caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtttccaatagattcgcacaaccttttatcataatttcttc |
10079453 |
T |
|
| Q |
426 |
tatgcaaggaagatgactaggcaaatgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaag |
525 |
Q |
| |
|
|||||||||||| | ||||| ||||| |||||||||| ||||||| | ||||| ||||| || |||| |||||||| | || ||||| ||||||||| |
|
|
| T |
10079452 |
tatgcaaggaaggtcgctaggaaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttattccttcaaag |
10079353 |
T |
|
| Q |
526 |
ggaag |
530 |
Q |
| |
|
||||| |
|
|
| T |
10079352 |
ggaag |
10079348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 10967364 - 10967519
Alignment:
| Q |
57 |
cacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccactt |
156 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| | ||| | |||||||||||| ||||||||||||| | |||||||||||| || ||| | |
|
|
| T |
10967364 |
cacaagtgatgtgtaattgctccacatttccggaggcaagaatgctaaattcttacagtcggaaatatcaagtgacttcaatgaagtgggaagtccatta |
10967463 |
T |
|
| Q |
157 |
gagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagt |
212 |
Q |
| |
|
|| | ||||||||||||||| | || | || |||||| ||||||| ||||||||| |
|
|
| T |
10967464 |
gatgaaaatgcagtgagagaggaaatataaatgagttgcaagtgttgaagacaagt |
10967519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 11244188 - 11244308
Alignment:
| Q |
61 |
agtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccacttgagg |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | ||| | | ||| | ||||| ||||| |||||| ||||||||||||||| ||| | |
|
|
| T |
11244188 |
agtgatgtgtaattgctccacgtttcaggaggtaggaatgttaagctgtcacaattgcgaatatgaagtgtttgcaaagaagtgggtagaccatttgtag |
11244287 |
T |
|
| Q |
161 |
gaaatgcagtgagagaaggaa |
181 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
11244288 |
gaaatgcagtgagagatggaa |
11244308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 213
Target Start/End: Complemental strand, 13397889 - 13397732
Alignment:
| Q |
56 |
tcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccact |
155 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | | ||| | |||||||| |||| ||| |||||| ||||| |||||||| |||||| | |
|
|
| T |
13397889 |
tcacaagtgatgtgtaattgctccatgtttcaggacgcaagaatgctaaattctgacactcatctatacgaagtgactgcaacgaagtgggaagaccatt |
13397790 |
T |
|
| Q |
156 |
tgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
213 |
Q |
| |
|
|| ||||||||||||||||| | || | || |||| ||||||||| |||||||||| |
|
|
| T |
13397789 |
tgctggaaatgcagtgagagaggaaatataaatgagatccaagtgttgaagacaagtg |
13397732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 10531086 - 10530892
Alignment:
| Q |
40 |
ctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatg |
139 |
Q |
| |
|
||||||||| ||||||| |||| |||||||| ||||||||||||||||||| | ||| | ||| |||| ||| |||| |||||| ||||||| |
|
|
| T |
10531086 |
ctccataaaataagactctcaagcgatgtgtatctgctccacgtttcaggaggcatgaatgctaacttctcacaattatcaatacaaagtgactgcaatg |
10530987 |
T |
|
| Q |
140 |
aagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaaca |
237 |
Q |
| |
|
|||||||||||||| | ||||||| |||||| |||||| || ||| ||| ||||| ||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
10530986 |
aagtgggtagaccattcttcggaaatgtagtgag---gggaagaccatagagctccgagtgtagaagacaagtgcttctcataatcattttaggaaca |
10530892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 11230092 - 11230137
Alignment:
| Q |
64 |
gatgtgtaattgctccacgtttcaggaggaaggaaggataaattct |
109 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| || |||||||||| |
|
|
| T |
11230092 |
gatgtgtaattgctccacgtatcaagaggaagaaacgataaattct |
11230137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 10679885 - 10679833
Alignment:
| Q |
40 |
ctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggagg |
92 |
Q |
| |
|
||||||||| |||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
10679885 |
ctccataaaataagactcacaagcgatgtatatctgctccacgtttcaggagg |
10679833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 456
Target Start/End: Complemental strand, 13397527 - 13397495
Alignment:
| Q |
424 |
tctatgcaaggaagatgactaggcaaatgtccc |
456 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
13397527 |
tctatggaaggaagatgactaggcaaatgtccc |
13397495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 51 - 529
Target Start/End: Original strand, 55257 - 55732
Alignment:
| Q |
51 |
aagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtaga |
150 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
55257 |
aagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgcaatgaagtgggtagt |
55356 |
T |
|
| Q |
151 |
ccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| ||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
55357 |
ccacttgagggaaatgcagtgagagaagaaagtgaatggagtttcaagtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagcttag |
55456 |
T |
|
| Q |
251 |
cacattcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaattttctt |
350 |
Q |
| |
|
||| | |||| |||| | |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||||| ||| | || |
|
|
| T |
55457 |
aacagttgtgaatcgctacatgttgcatcatacacggagaatcactctcaagcaatgacaattgggaactttcaccaagcccattgatattcattatttt |
55556 |
T |
|
| Q |
351 |
tactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgactaggcaaa |
450 |
Q |
| |
|
|| ||| ||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| | | |||||| |
|
|
| T |
55557 |
tattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaaggttggtgggcaaa |
55653 |
T |
|
| Q |
451 |
tgtccctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaa |
529 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| || || ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55654 |
tgtccccttagttctggacaatcacgtaactctattgccttaagttgaggaaaagcaaattttatgccttcaaagggaa |
55732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 56 - 530
Target Start/End: Complemental strand, 26909297 - 26908826
Alignment:
| Q |
56 |
tcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccact |
155 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||| | ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
26909297 |
tcacaagtgatgtgtaattgctccaggtttcaagaggtaggaaggataaattcaaacaaaattcaatttcaattgattgcaatgaagtgggtagaccact |
26909198 |
T |
|
| Q |
156 |
tgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaacacat |
255 |
Q |
| |
|
|||||| ||||| | || ||| | |||||||| ||||| ||||||| |||||| ||||||||||||||||||||||| | | |||||| | |||||| |
|
|
| T |
26909197 |
tgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgttgaagacatgtgcttctcagaatcaattttggcaaacctaatagcccaacacaa |
26909098 |
T |
|
| Q |
256 |
tcacgaataactacttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaattttctttactg |
355 |
Q |
| |
|
| |||| ||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||| | ||||||||| ||||||||||||| || | |
|
|
| T |
26909097 |
ttttgaatcactacatcttgcatcatacagggagaatcactcttaagcaatgacaatatggtccttttaccaagcccatggatattaattttcggtatgg |
26908998 |
T |
|
| Q |
356 |
acgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgactaggcaaatgtcc |
455 |
Q |
| |
|
|||||| |||||| ||||| ||| |||||||||||||||| | || |||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
26908997 |
acgacacccaatgtaaagtagatgg---tgtttccaatagatgatagcaaccttttattacaatttcttctatgcaaggaaggttgctaggcaaaagtcc |
26908901 |
T |
|
| Q |
456 |
ctttagtttgggacaattacgtaacttcatagctcgaagttgaggaaaagcgaattttatgccttcaaagggaag |
530 |
Q |
| |
|
|||||||| ||||||||| | |||| |||| || ||| ||||||||| || || || |||||||||||||| |
|
|
| T |
26908900 |
ttttagttttggacaattatgcaactcaatagttctgagtcgaggaaaagaaaaattcattccttcaaagggaag |
26908826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 17850570 - 17850756
Alignment:
| Q |
40 |
ctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatg |
139 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| | ||||| |||||| ||||||| |
|
|
| T |
17850570 |
ctccataactcaagactcgcaagtgatgtgtaattgttccacgtttcaggaggcatgaaggataaattcttacacatactaatatgaagtgactgcaatg |
17850669 |
T |
|
| Q |
140 |
aagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatca |
226 |
Q |
| |
|
||||| || || || | ||||||||||||||||| |||| | ||||||| ||||||| |||||||||||| |||| ||||| |
|
|
| T |
17850670 |
aagtgagttgaacatccgtcggaaatgcagtgagagacggaatatcattgagtgtcaagtgttgaagacaagtgctcctcataatca |
17850756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 461
Target Start/End: Complemental strand, 11487426 - 11487042
Alignment:
| Q |
68 |
tgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccacttgagggaaatgc |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||| || | |||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
11487426 |
tgtaattgctccacgtttcaggaggaaggaatgataaattctcacaactatgaacacaaagtgattgcaatgaagtaggtagaccctccgtaggaaatgc |
11487327 |
T |
|
| Q |
168 |
agtgagagaaggaagagaattgagttccaagtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaacacattcacgaataact |
267 |
Q |
| |
|
||||||||| |||| || |||| ||||| | |||| || |||| | | ||||||||||||| |||| | | ||| | ||||| | ||| || |
|
|
| T |
11487326 |
agtgagagacggaatcttatagagtctcaagtcttgaagaaaattgctgcactgaatcaattttggcacagatgacaacgtgacacacttttcaatcgct |
11487227 |
T |
|
| Q |
268 |
acttcttgcatcatacacggagaatcactctcaagcaatgacaattgggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaat |
367 |
Q |
| |
|
| | ||| ||||||||||||| |||||| |||| || |||| || |||| |||||| ||| ||||| |||||| |||| |||||||||||||| |
|
|
| T |
11487226 |
atatgctgcctcatacacggagagtcactcccaagtaaagacagttcggtcattccat------cattgatatcaattttttttattgacgacaaccaat |
11487133 |
T |
|
| Q |
368 |
gcaaagtgtttggctctgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgactaggcaaatgtccctttag |
461 |
Q |
| |
|
|||||| ||| ||||||||| ||||| | ||| ||| |||| ||||| ||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
11487132 |
gcaaagcagatgg---tgtttccaaaagatgggcacaacctgttatattaattttttctatgcaaggaaggtggctaggcaaatgtccccttag |
11487042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 44955662 - 44955732
Alignment:
| Q |
384 |
tgtttccaatagatgagaacacccttttattacaatttcttctatgcaaggaagatgactaggcaaatgtc |
454 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||||||||||||| ||| ||||||||| ||||| |||| |
|
|
| T |
44955662 |
tgtttccaatagatgagcacaatcttttatttcaatttcttctatggaagaaagatgacttggcaagtgtc |
44955732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 827942 - 827895
Alignment:
| Q |
416 |
caatttcttctatgcaaggaagatgactaggcaaatgtccctttagtt |
463 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
827942 |
caatttcctctatggaaggaagatggctaggcaaatgtcccttcagtt |
827895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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