View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12080_low_12 (Length: 502)
Name: NF12080_low_12
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 166 - 482
Target Start/End: Complemental strand, 30667515 - 30667198
Alignment:
| Q |
166 |
ggaattccgagaaaatcagaggggaagagaaattagaacattacaccaattccatgaccactttaccctaccttagaccatgatatatatcccctgcgca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30667515 |
ggaattccgagaaaatcagaggggaagagaaattagaacattacaccaattccatgacaactttaccctaccttagaccatgatatatatcccctgcgca |
30667416 |
T |
|
| Q |
266 |
ctcactacatacatctcctcacatgtattgttacaactaattcgctaccatgaagatttggccttctttttaacttattcgtccactagtcgtattacag |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30667415 |
ctcactacatacatctcctcacatgtattgttacaactaattcgctaccatgaagatttggccttctttttaacttattcgtccactagtcgtattacag |
30667316 |
T |
|
| Q |
366 |
aaccttgaagcaagg-tataagatttcagagaatctaaacatagaattcagaattgaaatctcagagaatgataagtcactcgaagaagttacagcaatg |
464 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30667315 |
aaccttgaagcaaggctataatatttcagagaatctaaacatagaattcagaattgaattctcagagaatgataagtcactcgaagaagttacagcaatg |
30667216 |
T |
|
| Q |
465 |
tgtcgtcgatgtgcccat |
482 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
30667215 |
tgtcgtcgacgtgcccat |
30667198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 30667680 - 30667579
Alignment:
| Q |
1 |
aacttaatgttaagagagaattgtggtatgcagagaaatggacggatcaattgtaaagcataattctcaacttatagtagatagactagaaggtagtaca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30667680 |
aacttaatgttaagagagaattgcggtatgcagagaaatggacgaatcaattgtaaagcataattctcaacttatagtagatagactagaaggtagtaca |
30667581 |
T |
|
| Q |
101 |
at |
102 |
Q |
| |
|
|| |
|
|
| T |
30667580 |
at |
30667579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University