View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12080_low_17 (Length: 435)

Name: NF12080_low_17
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12080_low_17
NF12080_low_17
[»] chr6 (2 HSPs)
chr6 (113-424)||(7103872-7104189)
chr6 (113-424)||(8790441-8790758)
[»] chr4 (1 HSPs)
chr4 (113-424)||(38233949-38234266)
[»] chr1 (7 HSPs)
chr1 (113-424)||(48198293-48198610)
chr1 (137-424)||(48206949-48207242)
chr1 (237-424)||(20112112-20112305)
chr1 (295-424)||(19004013-19004148)
chr1 (241-424)||(23326396-23326585)
chr1 (296-424)||(17566545-17566673)
chr1 (248-424)||(17566156-17566338)
[»] chr7 (3 HSPs)
chr7 (113-424)||(12894615-12894932)
chr7 (113-279)||(46035881-46036052)
chr7 (113-143)||(26182739-26182769)
[»] chr5 (4 HSPs)
chr5 (241-424)||(18929433-18929616)
chr5 (113-153)||(39709795-39709835)
chr5 (162-205)||(39709718-39709761)
chr5 (205-239)||(39709458-39709492)
[»] chr2 (2 HSPs)
chr2 (203-239)||(41869774-41869810)
chr2 (172-205)||(41870034-41870067)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 113 - 424
Target Start/End: Complemental strand, 7104189 - 7103872
Alignment:
Q  113 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104189 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 7104090  T
Q  213 ggtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7104089 agtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 7103990  T
Q  313 attgagttaatcattattgtcttcatgaataggtaacattgaagatg------aagactcgttagaagggtcaattggaaactcatcggaacgacattct 406  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||      |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7103989 attgagttcatcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattct 7103890  T
Q  407 ttgcgaagaaagttatga 424  Q
    ||||||||||||||||||    
T  7103889 ttgcgaagaaagttatga 7103872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 113 - 424
Target Start/End: Original strand, 8790441 - 8790758
Alignment:
Q  113 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8790441 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 8790540  T
Q  213 ggtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8790541 agtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 8790640  T
Q  313 attgagttaatcattattgtcttcatgaataggtaacat------tgaagatgaagactcgttagaagggtcaattggaaactcatcggaacgacattct 406  Q
    |||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  8790641 attgagttcatcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattct 8790740  T
Q  407 ttgcgaagaaagttatga 424  Q
    ||||||||||||||||||    
T  8790741 ttgcgaagaaagttatga 8790758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 113 - 424
Target Start/End: Complemental strand, 38234266 - 38233949
Alignment:
Q  113 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38234266 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 38234167  T
Q  213 ggtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38234166 agtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 38234067  T
Q  313 attgagttaatcattattgtcttcatgaataggtaacattgaagatg------aagactcgttagaagggtcaattggaaactcatcggaacgacattct 406  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||      |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  38234066 attgagttcatcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattct 38233967  T
Q  407 ttgcgaagaaagttatga 424  Q
    ||||||||||||||||||    
T  38233966 ttgcgaagaaagttatga 38233949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 113 - 424
Target Start/End: Complemental strand, 48198610 - 48198293
Alignment:
Q  113 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48198610 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 48198511  T
Q  213 ggtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48198510 agtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 48198411  T
Q  313 attgagttaatcattattgtcttcatgaataggtaacattgaagatg------aagactcgttagaagggtcaattggaaactcatcggaacgacattct 406  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||      |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  48198410 attgagttcatcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattct 48198311  T
Q  407 ttgcgaagaaagttatga 424  Q
    ||||||||||||||||||    
T  48198310 ttgcgaagaaagttatga 48198293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 137 - 424
Target Start/End: Complemental strand, 48207242 - 48206949
Alignment:
Q  137 taaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttagggtagtatcacggtattccttgta 236  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48207242 taaaacaaggttatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttagagtagtatcacggtattccttgta 48207143  T
Q  237 catctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttaatcattattgtcttc 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48207142 catctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtcttc 48207043  T
Q  337 atgaataggtaacattgaagatg------aagactcgttagaagggtcaattggaaactcatcggaacgacattctttgcgaagaaagttatga 424  Q
    |||||||||||||||||||||||      |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48207042 atgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattctttgcgaagaaagttatga 48206949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 237 - 424
Target Start/End: Original strand, 20112112 - 20112305
Alignment:
Q  237 catctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttaatcattattgtcttc 336  Q
    ||||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  20112112 catctctccgcatatctgaacctatattagtcctccatagattagcatcttctcgttctcgctcttgtgtttgaacattgagttcataattattgtcttc 20112211  T
Q  337 atgaataggtaacat------tgaagatgaagactcgttagaagggtcaattggaaactcatcggaacgacattctttgcgaagaaagttatga 424  Q
    |||||||||||||||      |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  20112212 atgaataggtaacattgaatatgaatatgaagactcgttagaaggttcaattggaaattaatcggaacgacattctttgcgaagaaagttatga 20112305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 19004013 - 19004148
Alignment:
Q  295 ttgctcttgtgtttgaacattgagttaatcattattgtcttcatgaataggtaacat------tgaagatgaagactcgttagaagggtcaattggaaac 388  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||||     
T  19004013 ttgctcttgtgtttgaacattgagttcatcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaat 19004112  T
Q  389 tcatcggaacgacattctttgcgaagaaagttatga 424  Q
    ||||||||||||||||||||||||||||||||||||    
T  19004113 tcatcggaacgacattctttgcgaagaaagttatga 19004148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 241 - 424
Target Start/End: Complemental strand, 23326585 - 23326396
Alignment:
Q  241 tctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttaatcattattgtcttcatga 340  Q
    ||||||||| ||| |||||| |  ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||  |||    
T  23326585 tctccacatgtctgaacctataccagtcctccataaattagcatcttctcgtttttgctcttgtgtttgaatattgagttcataattattgtcttagtga 23326486  T
Q  341 ataggtaacattgaagatg------aagactcgttagaagggtcaattggaaactcatcggaacgacattctttgcgaagaaagttatga 424  Q
    |||||||||||||||||||      |||||||||||| ||| ||| ||||||  |||| ||||| ||||||||||| |||||| ||||||    
T  23326485 ataggtaacattgaagatgaagatgaagactcgttagtaggttcatttggaatttcattggaacaacattctttgcaaagaaatttatga 23326396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 424
Target Start/End: Original strand, 17566545 - 17566673
Alignment:
Q  296 tgctcttgtgtttgaacattgagttaatcattattgtcttcatgaataggtaacattgaagatgaagactcgttagaagggtcaattggaaactcatcgg 395  Q
    ||||||||||||| ||||||| ||| || |||||||||||  ||| | ||||||||||||||||||||||||| || ||| |||| || ||| |||||      
T  17566545 tgctcttgtgtttaaacattgggttcataattattgtctttgtgattcggtaacattgaagatgaagactcgtcagtaggttcaactgaaaattcatcat 17566644  T
Q  396 aacgacattctttgcgaagaaagttatga 424  Q
    ||||| |||||||||||||||||||||||    
T  17566645 aacgatattctttgcgaagaaagttatga 17566673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 424
Target Start/End: Complemental strand, 17566338 - 17566156
Alignment:
Q  248 atatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttaatcattattgtcttcatgaataggta 347  Q
    ||||||||||||| | |||| | ||||| ||||||||||||||||   |||||||||||||||||||||  || || ||||||| |||| ||||| |  |    
T  17566338 atatctaaacctatactagttcaccataaattagcatcttctcgtaactgctcttgtgtttgaacattggcttcataattattgacttcgtgaattgaca 17566239  T
Q  348 acattgaagatgaa------gactcgttagaagggtcaattggaaactcatcggaacgacattctttgcgaagaaagttatga 424  Q
    |  |||||||||||      ||| | |||| ||| ||||||||||| ||||  || ||||||| ||||||||||| |||||||    
T  17566238 aagttgaagatgaagatgaggacccattagtaggttcaattggaaattcattcgagcgacattatttgcgaagaatgttatga 17566156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 113 - 424
Target Start/End: Original strand, 12894615 - 12894932
Alignment:
Q  113 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 212  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12894615 tgtcttgctggtaatgaagtttcttaaaacaagattatcttcagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 12894714  T
Q  213 ggtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 312  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12894715 agtagtatcacggtattccttgtacatctctccacatatctaaacctatattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaac 12894814  T
Q  313 attgagttaatcattattgtcttcatgaataggtaacat------tgaagatgaagactcgttagaagggtcaattggaaactcatcggaacgacattct 406  Q
    |||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  12894815 attgagttcatcattattgtcttcatgaataggtaacattgaagatgaagatgaagactcgttagaaggttcaattggaaattcatcggaacgacattct 12894914  T
Q  407 ttgcgaagaaagttatga 424  Q
    ||||||||||||||||||    
T  12894915 ttgcgaagaaagttatga 12894932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 113 - 279
Target Start/End: Original strand, 46035881 - 46036052
Alignment:
Q  113 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtt--- 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  46035881 tgtcttgctggtaatgaagtttcttaaaacaagattatctttagatattagcatctcccaatatgaaaagggaaatgtgattcactgaatcaccgtttag 46035980  T
Q  210 --tagggtagtatcacggtattccttgtacatctctccacatatctaaacctaaattagtcctccatatatt 279  Q
      ||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46035981 agtagagtagtatcacggtatttcttgtacatctctccacatatctaaacctatattagtcctccatatatt 46036052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 26182769 - 26182739
Alignment:
Q  113 tgtcttgctggtaatgaagtttcttaaaaca 143  Q
    |||||||||||||||||||||||||||||||    
T  26182769 tgtcttgctggtaatgaagtttcttaaaaca 26182739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 424
Target Start/End: Complemental strand, 18929616 - 18929433
Alignment:
Q  241 tctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttaatcattattgtcttcatga 340  Q
    |||||||||||||||||||| |||| ||||||||| |||||||| ||||| || || |||||||||||||||| ||  ||||| |||||||||||  |||    
T  18929616 tctccacatatctaaacctatattattcctccataaattagcattttctcatttttactcttgtgtttgaacaatggattaataattattgtcttattga 18929517  T
Q  341 ataggtaacattgaagatgaagactcgttagaagggtcaattggaaactcatcggaacgacattctttgcgaagaaagttatga 424  Q
    |  |||||||   |||| ||||||| ||||  | | |||| || ||| |||| | ||  ||||| ||| |||||||||||||||    
T  18929516 acgggtaacaccaaagacgaagacttgttaatatgttcaagtgaaaattcattgaaataacattatttacgaagaaagttatga 18929433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 39709835 - 39709795
Alignment:
Q  113 tgtcttgctggtaatgaagtttcttaaaacaagattatctt 153  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  39709835 tgtcttgctgataatgaagtttcttaaaacaagattatctt 39709795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 39709761 - 39709718
Alignment:
Q  162 agcatctcccaatatgaaaagggaaatgtgattcactgaatcac 205  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||    
T  39709761 agcaactcccaatatgagaagcgaaatgtgattcactgaatcac 39709718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 39709492 - 39709458
Alignment:
Q  205 ccgtttagggtagtatcacggtattccttgtacat 239  Q
    |||||||| ||||||||||||||||||||||||||    
T  39709492 ccgtttagagtagtatcacggtattccttgtacat 39709458  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 41869810 - 41869774
Alignment:
Q  203 caccgtttagggtagtatcacggtattccttgtacat 239  Q
    |||||||||| ||||||||||||||||||||||||||    
T  41869810 caccgtttagagtagtatcacggtattccttgtacat 41869774  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 41870067 - 41870034
Alignment:
Q  172 aatatgaaaagggaaatgtgattcactgaatcac 205  Q
    ||||||| ||||||||||||||||||||||||||    
T  41870067 aatatgagaagggaaatgtgattcactgaatcac 41870034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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