View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_19 (Length: 421)
Name: NF12080_low_19
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 29411849 - 29412237
Alignment:
| Q |
20 |
aagttcattctgatgtgaacattattatgtatgggtaaacatagtatcatgactaattagtgttaccttatgatgtgctagtaaaaatgaatttgttgta |
119 |
Q |
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| T |
29411849 |
aagttcattctgatgtgaacattattatgtatgggtaaacatagtatcatgactaattagtgttaccttatgatgtgctagtaaaaatgaatttgttgta |
29411948 |
T |
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| Q |
120 |
cacaactggaataatcaacaaaagaatccaagtaattgacactatcaagcatctttatgtataacaattataaacgaggttttatgcttcgttttaactt |
219 |
Q |
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| T |
29411949 |
cacaactggaataatcaacaaaagaatccaagtaattgacactatcaagcatctttatgtataacaattataaacgaggttttatgcttcgttttaactt |
29412048 |
T |
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| Q |
220 |
ttatataatactattgcttgagagaagaaattcgctttgacaactttatgcttcatttgtaacaaagaagaaataaaaattccttagaagaatgaatata |
319 |
Q |
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| T |
29412049 |
ttatataatactattgcttgagagaagaaattcgctttgacaactttatgcttcatttgtaacaaagaagaaataaaaattccttagaagaatgaatata |
29412148 |
T |
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| Q |
320 |
aatatacctcatcagaaatactgacttgccacttaagttgtaaagctttttcctgtcgccagcgttgaccaagcatcaccaaacccatc |
408 |
Q |
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| T |
29412149 |
aatatacctcatcagaaatactgacttgccacttaagttgtaaagctttttcctgtcgccagcgttgaccaagcatcaccaaacccatc |
29412237 |
T |
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