View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_2 (Length: 995)
Name: NF12080_low_2
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 36559693 - 36560122
Alignment:
| Q |
17 |
acatcaattcagtgttaaattccattcatgcatgtatttattatgaatggacaaaaagtaataataataatgttagagtgggtaacaaaagcttgatatt |
116 |
Q |
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| T |
36559693 |
acatcaattcagtgttaaattccattcatgcatgtatttattatgaatggacaaaaagtaataataataatgttagagtgggtaacaaaagcttgatatt |
36559792 |
T |
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| Q |
117 |
caatcttaaccaggccactgtgnnnnnnnnnnnnnn----gaacagaaattaactatgccactgtgtattcaggtacttctattgtgttgtttcctagca |
212 |
Q |
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| T |
36559793 |
caatcttaaccaggccactgtgttttttttttttttttttgaacagaaattaactatgccactgtgtattcaggtacttttattgtgttgtttcctagca |
36559892 |
T |
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| Q |
213 |
caagcctgataggtataagcctcgatcactttatatatatgaacagtggattcaattaaacctagagagggagaaaaatgatgtcacaatattgtaccaa |
312 |
Q |
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| T |
36559893 |
caagcctgataggtataagcctcgatcactttatgtatatgaacagtggattcaattaaacctagagagggagaaaaatgatgtcacaatattgtaccaa |
36559992 |
T |
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| Q |
313 |
tagtaacactcaatcatcataatcataataatatactttcaattaattgccacctctcttcctagc-taatattaagtgtcaccaactgtcttaatttac |
411 |
Q |
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| T |
36559993 |
tagtaacactcaatcatcataatcataataatatactttcaattaattgccacctctcttcctagcttaatattaagtgtcaccaactgtcttaatttac |
36560092 |
T |
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| Q |
412 |
tagacccaccaaattgtaccttttccactc |
441 |
Q |
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| T |
36560093 |
tagacccaccaaattgtaccttttccactc |
36560122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 506 - 760
Target Start/End: Original strand, 36560187 - 36560441
Alignment:
| Q |
506 |
acactccgtgtaatctatcttatattttttaaatctcatatattttctttaatattaagttaatttcttacacaaagctaataggaatattactgccgtt |
605 |
Q |
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| T |
36560187 |
acactccgtgtaatctatcttatattttttaaatctcatatattttctttaatattaagttaatttcttacacaaagctaataggaatattactgccgtt |
36560286 |
T |
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| Q |
606 |
tgtttatggcttttcctatatctcttcatgggtaaaataaaaaatgttaggtaagatattatagaagttttattttttatgagatatcatagaagctttg |
705 |
Q |
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| T |
36560287 |
tgtttatggcttttcctatatctcttcatgggtaaaataaaaaatgttaggtaagatattatagaagttttattttttatgagatatcatagaagctttg |
36560386 |
T |
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| Q |
706 |
gaaatacatttaaattaaaaactagattaaatattctcaaaaattctaatttttt |
760 |
Q |
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| T |
36560387 |
aaaatacatttaaattaaaaactagattaaatattctcaaaaattctattttttt |
36560441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 841 - 977
Target Start/End: Original strand, 36560540 - 36560676
Alignment:
| Q |
841 |
tactatgacctattttctctagttaatctatatcagtccatttcttcatgaacatatggagaaattaaattaataggacactaagcttttctaagtagga |
940 |
Q |
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| T |
36560540 |
tactatgacctattttctctagttaacctatatcagtccatttcttcatgaacatatggagaaattaaattaataggacactaagcttttctaagtagga |
36560639 |
T |
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| Q |
941 |
gttcctttttaatattcactgtaatcttggggattgg |
977 |
Q |
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| T |
36560640 |
gttcctttttaatattcattgtaatcttggggattgg |
36560676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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