View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_20 (Length: 405)
Name: NF12080_low_20
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 41448470 - 41448859
Alignment:
| Q |
13 |
agatgaaggcaaggaatatcttggaacaacacatttgaaattttgatgatacacttcactattcaaagaattttctgctcaattgtaaacccaaacacta |
112 |
Q |
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| T |
41448470 |
agatgaaggcaaggaatatcttggaacaacacatttgaaattttgatgatgcacttcactattcaaagaattttctgctcaattgtaaacccaaacacta |
41448569 |
T |
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| Q |
113 |
ttggaggagaatac-------------aaaaaacccactcatttttccccctaaaatcggaaagaaacaaatgcctagtctaaaagctacattccacata |
199 |
Q |
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| T |
41448570 |
ttggaggagaatacgaaaaaccaacacaaaaaacccactcatttttccccctaaaatcggaaagaaacaaatgcctagtctaaaagctacattccacata |
41448669 |
T |
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| Q |
200 |
atattttcgtggtgacttatttcattgatgaaaataaacttaatctatatgaatagaagacacagctgatgtgatttcattggttcttgggtcagcactt |
299 |
Q |
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| T |
41448670 |
atattttcgtggtgacttatttctttgatgaaaataaacttaatctatatgaatagaagacacagctgatgtgatttcattggttcttgggtcagcactt |
41448769 |
T |
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| Q |
300 |
tctaatgaaactccacaaggatcttctttaactagcatggcaagaacattaagtgaactccatgttttcgtcacgttgctgttcgaatct |
389 |
Q |
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| T |
41448770 |
tctaatgaaactccacaaggatcttctttaactagcatggcaagaacattaagtgaactccatgttttcgtcacgttgctgttcgaatct |
41448859 |
T |
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