View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_21 (Length: 392)
Name: NF12080_low_21
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 43091479 - 43091114
Alignment:
| Q |
19 |
gatctttgaagggaatgagtttgccacagaagattatgttgtcatgaattgttgaagtgttgaattcttcactgaaaaactcaaacaagttnnnnnnnnn |
118 |
Q |
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| T |
43091479 |
gatctttgaagggaatgagtttgccacagaagattatgttgtcatgaattgttgaagtgttgaattcttcactgaaaaactcaaacaagttatcatcatc |
43091380 |
T |
|
| Q |
119 |
nnnnnnnnnnnggtgatccttgccataattggaaaaatcacctcgttgaggtgaaattgtggaatttggaaggtcacaaagtgataaagtttcttcttct |
218 |
Q |
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| T |
43091379 |
atcatcatcatggtgatccttgccataattggaaaaatcaccccgttgaggtgaaattgtggaatttggaaggtcacaaagtgataaagtttcttcttct |
43091280 |
T |
|
| Q |
219 |
tcataatcatcatactcatcttgtagcaaagtactttcttcattccctacttcttcatgtgagtagaattctttagccaccatattgatgcnnnnnnnnn |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43091279 |
tcataatcatcatactcatcttgtagcaaagtactttcttcattccctacttcttgatgtgagtagaattctttagccaccatattgatgcaaaacaaaa |
43091180 |
T |
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| Q |
319 |
nnnnnnngaaatttgtgaagaatatttctttttcttcctattggtttaaggtgtgtctgtctaatt |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091179 |
aacaaaagaaatttgtgaagaatatttctttttcttcctattggtttaaggtgtgtctgtctaatt |
43091114 |
T |
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