View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_23 (Length: 385)
Name: NF12080_low_23
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 41 - 371
Target Start/End: Original strand, 17996042 - 17996372
Alignment:
| Q |
41 |
aataacaccaagctagatggctattgtgaactggatcaatatccttcatacattcaatatgcaggagcatctttctgtctcccatctctgtgactttaac |
140 |
Q |
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| T |
17996042 |
aatatcaccaagctagatggctattgcgaaccgggtcaatatccttcataccttcaatatgcaaaagcatctttctgtctcccatctctatgactttaac |
17996141 |
T |
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| Q |
141 |
accttgaatgccttccataaccaaagcttgttgcacctccaaaacatcattatgatggaacagttcccctataaaggcccactgcaaatagtccagcata |
240 |
Q |
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| T |
17996142 |
acctcgaatgccttccataaccaaagcttgttgcacctccaaagcatccttctgatggaacagttcccccataaaggtccactgcaaatagtctagcatc |
17996241 |
T |
|
| Q |
241 |
tcctccgatggaagaatttccaatgttggagaaaccccattcataaccggaaaattatccttctccaacgtcaacgcatttttgaacgatttccccggag |
340 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17996242 |
tccttcgatggaacaatttccaatgttggagcaaccccattcaaaatcggaaaattatccttttccaacgtcaacgcatttttgaacgatttccccggag |
17996341 |
T |
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| Q |
341 |
tagcggtgacgccaaagccttcctccgcctc |
371 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
17996342 |
tagcggtgacgccaaagccttcctccgcctc |
17996372 |
T |
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