View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_26 (Length: 349)
Name: NF12080_low_26
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 3 - 336
Target Start/End: Complemental strand, 52809782 - 52809449
Alignment:
| Q |
3 |
tgaacttgaaagaatggggattgggttaataattgcaatgttgtcaatggttgcatcaggtatgacagagatcgcaaggctgagaaatataattcctggg |
102 |
Q |
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| T |
52809782 |
tgaacttgaaagaatgggaattgggttaataattgcaatgttgtcaatggttgcatcaggtatgacagagatggtaaggctgagaaatataattcctggg |
52809683 |
T |
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| Q |
103 |
cagaaaagaagttcaatgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttcttta |
202 |
Q |
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| T |
52809682 |
cagaaaagaagttcaatgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttcttta |
52809583 |
T |
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| Q |
203 |
atggtcaagcaccagatggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatgcttgttcacgtggt |
302 |
Q |
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| T |
52809582 |
atggtcaagcaccagatggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatgcttgttcacgtggt |
52809483 |
T |
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| Q |
303 |
gatgcaaatcactgcaagagggaatgacaaaggt |
336 |
Q |
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| T |
52809482 |
catgaaaatcactgcaagagggaatgacaaaggt |
52809449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 397759 - 397928
Alignment:
| Q |
119 |
tgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccaga |
218 |
Q |
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| T |
397759 |
tgagtatattctgtcaaattccacagtatgttcttgttggtgcttcagaagtttttatgtatgtgggtcagttggagttcttcaatggtcaagcacctga |
397858 |
T |
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| Q |
219 |
tggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatg |
288 |
Q |
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| T |
397859 |
tggcataaaaagctttggaagttcactttgtatggcatcaatttctcttggaaactatgttagcagcatg |
397928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 3803025 - 3802856
Alignment:
| Q |
119 |
tgagtatattctatcaaattccacagtatgttctgattggtgcttcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccaga |
218 |
Q |
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| T |
3803025 |
tgagtatattctatcaaattccacagtatgttcttgttggggcttcagaagtttttgtgtatgtgggtcagttggagttcttcaatggtcaagccccgga |
3802926 |
T |
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| Q |
219 |
tggaataaaaagttttgggagttcactttgtatggcttcaatttctcttggaaactatgtgagtagcatg |
288 |
Q |
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| T |
3802925 |
tggcataaaaagctttggaagttcactttgtatggcttcaatttctcttggaaactatgttagcagcatg |
3802856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 294
Target Start/End: Original strand, 2745785 - 2745916
Alignment:
| Q |
163 |
tcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccagatggaataaaaagttttgggagttcactttgtatggcttcaattt |
262 |
Q |
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| T |
2745785 |
tcagaagttttcatgtatgttggtcaattggagtttttcaattcacaggcacctgatggattgaaaagctttggaagtgcactttgtatgacttcaatat |
2745884 |
T |
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| Q |
263 |
ctcttggaaactatgtgagtagcatgcttgtt |
294 |
Q |
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| T |
2745885 |
cattaggaaactatgttagtagcttgcttgtt |
2745916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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