View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12080_low_28 (Length: 341)

Name: NF12080_low_28
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12080_low_28
NF12080_low_28
[»] scaffold0014 (1 HSPs)
scaffold0014 (229-305)||(191422-191498)
[»] chr5 (9 HSPs)
chr5 (236-326)||(23435090-23435181)
chr5 (236-326)||(23446457-23446548)
chr5 (231-314)||(20725103-20725187)
chr5 (248-320)||(12322118-12322190)
chr5 (257-324)||(20801943-20802012)
chr5 (247-324)||(9729125-9729204)
chr5 (247-323)||(22855968-22856046)
chr5 (265-324)||(29053247-29053308)
chr5 (231-314)||(12410271-12410355)
[»] chr8 (15 HSPs)
chr8 (229-314)||(42418769-42418855)
chr8 (229-306)||(6570764-6570841)
chr8 (229-306)||(22284714-22284791)
chr8 (229-304)||(14878526-14878602)
chr8 (229-287)||(17126604-17126662)
chr8 (257-324)||(21949929-21949998)
chr8 (231-314)||(14162408-14162492)
chr8 (231-276)||(23455327-23455371)
chr8 (265-320)||(18264630-18264686)
chr8 (265-320)||(18273643-18273699)
chr8 (265-324)||(25228457-25228517)
chr8 (265-320)||(37299963-37300019)
chr8 (265-314)||(43836530-43836580)
chr8 (270-315)||(17516033-17516080)
chr8 (228-314)||(23222256-23222343)
[»] chr6 (10 HSPs)
chr6 (229-306)||(25786610-25786687)
chr6 (231-313)||(22601606-22601688)
chr6 (229-314)||(29093302-29093388)
chr6 (229-320)||(30245003-30245094)
chr6 (231-314)||(28734399-28734483)
chr6 (265-324)||(22787708-22787768)
chr6 (229-314)||(8603252-8603338)
chr6 (236-306)||(29360073-29360143)
chr6 (270-315)||(24218547-24218593)
chr6 (265-324)||(27323274-27323334)
[»] chr2 (9 HSPs)
chr2 (229-286)||(28496934-28496991)
chr2 (265-324)||(24076957-24077017)
chr2 (265-324)||(22037512-22037573)
chr2 (231-303)||(24177942-24178014)
chr2 (229-320)||(30949493-30949585)
chr2 (261-305)||(29562971-29563015)
chr2 (229-303)||(27744799-27744873)
chr2 (265-321)||(33181473-33181530)
chr2 (247-306)||(538955-539015)
[»] chr3 (13 HSPs)
chr3 (236-304)||(2721689-2721757)
chr3 (229-306)||(2005700-2005778)
chr3 (229-304)||(40846540-40846615)
chr3 (229-320)||(51034548-51034639)
chr3 (257-320)||(15573623-15573688)
chr3 (257-323)||(11947820-11947888)
chr3 (265-320)||(14139656-14139712)
chr3 (236-314)||(42244808-42244887)
chr3 (247-306)||(3279587-3279647)
chr3 (257-323)||(5212396-5212464)
chr3 (270-321)||(10546673-10546725)
chr3 (265-324)||(11868542-11868602)
chr3 (265-324)||(42280746-42280806)
[»] chr7 (10 HSPs)
chr7 (236-314)||(1611776-1611855)
chr7 (265-324)||(5397538-5397599)
chr7 (231-314)||(4090451-4090535)
chr7 (231-314)||(17206656-17206740)
chr7 (265-321)||(34390425-34390482)
chr7 (257-314)||(27291750-27291809)
chr7 (256-315)||(11921049-11921110)
chr7 (290-323)||(16331081-16331114)
chr7 (265-320)||(11997580-11997636)
chr7 (265-320)||(12575624-12575680)
[»] chr1 (7 HSPs)
chr1 (236-314)||(28764127-28764206)
chr1 (248-321)||(25646510-25646584)
chr1 (231-314)||(13799711-13799795)
chr1 (265-320)||(19788527-19788583)
chr1 (265-319)||(4028101-4028156)
chr1 (236-277)||(25726705-25726745)
chr1 (236-277)||(25735113-25735153)
[»] scaffold0443 (1 HSPs)
scaffold0443 (247-324)||(103-182)
[»] scaffold0084 (1 HSPs)
scaffold0084 (236-306)||(31410-31480)
[»] chr4 (7 HSPs)
chr4 (236-320)||(39972-40057)
chr4 (231-277)||(9856949-9856994)
chr4 (257-324)||(15254761-15254830)
chr4 (231-324)||(16218053-16218147)
chr4 (231-324)||(16221373-16221467)
chr4 (290-323)||(3391782-3391815)
chr4 (257-312)||(15268341-15268398)
[»] scaffold1225 (1 HSPs)
scaffold1225 (229-304)||(2073-2148)
[»] scaffold0396 (1 HSPs)
scaffold0396 (257-323)||(2309-2377)
[»] scaffold0230 (1 HSPs)
scaffold0230 (256-324)||(16090-16160)
[»] scaffold0032 (1 HSPs)
scaffold0032 (257-324)||(98348-98417)
[»] scaffold0009 (1 HSPs)
scaffold0009 (231-324)||(154096-154191)
[»] scaffold0506 (1 HSPs)
scaffold0506 (265-320)||(9842-9898)
[»] scaffold0486 (1 HSPs)
scaffold0486 (265-324)||(12043-12103)
[»] scaffold0142 (1 HSPs)
scaffold0142 (270-321)||(21917-21970)
[»] scaffold0004 (1 HSPs)
scaffold0004 (265-324)||(24527-24588)
[»] scaffold0001 (1 HSPs)
scaffold0001 (236-314)||(520497-520577)
[»] scaffold0582 (1 HSPs)
scaffold0582 (265-313)||(9076-9125)
[»] scaffold0220 (1 HSPs)
scaffold0220 (290-323)||(5298-5331)
[»] scaffold0060 (1 HSPs)
scaffold0060 (265-321)||(73439-73496)
[»] scaffold0011 (1 HSPs)
scaffold0011 (265-306)||(164156-164197)


Alignment Details
Target: scaffold0014 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 191498 - 191422
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagatagaagcttggcacggc 305  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  191498 taggagctgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagtcagaagcttggcacggc 191422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 23435090 - 23435181
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagatagaagcttggcac-ggccgtgccaccccccagagtctc 326  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||  ||||||||    
T  23435090 tgattcgggttgaaaatatgaaagattgaagacaaaaataagtttccccaagttagaagcttggcacgggccgtgccaccccttagagtctc 23435181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 23446457 - 23446548
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagatagaagcttggcac-ggccgtgccaccccccagagtctc 326  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||  ||||||||    
T  23446457 tgattcgggttgaaaatatgaaagattgaagacaaaaataagtttccccaagttagaagcttggcacgggccgtgccaccccttagagtctc 23446548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 20725187 - 20725103
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatat-gtttccccaagatagaagcttggcacggcc-gtgccacc 314  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||  ||||||||||  ||||||||||||||||| ||||||||    
T  20725187 ggagctgattcgggttgaaaatacg-aagattgaagacaaaaatataatttccccaagtcagaagcttggcacggcctgtgccacc 20725103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 12322118 - 12322190
Alignment:
Q  248 aaaatacgaaagattgaagacaaaaatatgtt-tccccaagatagaagcttggcacggccgtgccaccccccag 320  Q
    |||||||||| |||||||||||||||||| || ||||||||  ||||||||||||||||| ||||||| |||||    
T  12322118 aaaatacgaa-gattgaagacaaaaatatattctccccaagtcagaagcttggcacggccatgccacctcccag 12322190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 20801943 - 20802012
Alignment:
Q  257 aagattga-agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||| |||||||||||||| ||||| |||  |||||| ||||||||||||||||||| ||||||||    
T  20801943 aagattgagagacaaaaatatgtctcccccaagtcagaagcctggcacggccgtgccaccctccagagtc 20802012  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 9729204 - 9729125
Alignment:
Q  247 gaaaatacgaaagattgaagacaaaaatatgtttcccc--aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||   ||| |||||||||||||| ||||   |||  |||||||||||||||||||||||||| ||||||||    
T  9729204 gaaaatacgaagatttggagacaaaaatatgtctccctcaaagtcagaagcttggcacggccgtgccaccctccagagtc 9729125  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 22855968 - 22856046
Alignment:
Q  247 gaaaatacgaaagattga-agacaaaaatatgtttcccc-aagatagaagcttggcacgg-ccgtgccaccccccagagt 323  Q
    ||||||||||| |||||| |||||||||||||| ||||| |||  ||||||||||||||| ||||||||||| |||||||    
T  22855968 gaaaatacgaa-gattgagagacaaaaatatgtctccccaaagtcagaagcttggcacggcccgtgccaccctccagagt 22856046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 29053308 - 29053247
Alignment:
Q  265 agacaaaaatatgtttcccc--aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||| |||||  |||  |||||||||||||||||||||||||| ||| ||||    
T  29053308 agacaaaaatatgtctcccccaaagtcagaagcttggcacggccgtgccaccctccaaagtc 29053247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 12410271 - 12410355
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttcccc-aagatagaagcttggcacgg-ccgtgccacc 314  Q
    |||| ||||||| | |||||||||||| |||||||  |||||||||| |||||| |||  ||||||||||||||| ||||||||||    
T  12410271 ggagctgattcgtgctgaaaatacgaa-gattgaatgcaaaaatatgattcccccaagtcagaagcttggcacggcccgtgccacc 12410355  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 42418855 - 42418769
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagatagaagcttggcacggcc-gtgccacc 314  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||| ||||||||    
T  42418855 taggagctgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagtcagaagcttggcatggccagtgccacc 42418769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 6570841 - 6570764
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagatagaagcttggcacggcc 306  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  6570841 taggagctgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagtcagaaccttggcacggcc 6570764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 22284714 - 22284791
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagatagaagcttggcacggcc 306  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  22284714 taggagctgattcgggttgaaaatacgaaagattgaagaccaaaatatgtttccccaagtcagaagcttggcacggcc 22284791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 14878602 - 14878526
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacgg 304  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  14878602 taggagctgattcgggttgaaaatacgaaagattgaagacaaaaatatgttttccccaagtcagaagcttggcacgg 14878526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 17126604 - 17126662
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaag 287  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17126604 taggagctgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaag 17126662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 21949929 - 21949998
Alignment:
Q  257 aagattga-agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||| |||||||||||||| ||||| |||  |||||||||||||||||||||||||| ||||||||    
T  21949929 aagattgagagacaaaaatatgtctcccccaagtcagaagcttggcacggccgtgccaccctccagagtc 21949998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 14162492 - 14162408
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacgg-ccgtgccacc 314  Q
    |||| ||||||||||||||||||| ||||||| || |||||||||||  | |||||||  ||||||||||||||| ||||||||||    
T  14162492 ggagctgattcgggttgaaaatac-aaagattcaatacaaaaatatgactcccccaagtcagaagcttggcacggcccgtgccacc 14162408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 23455327 - 23455371
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatat 276  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||    
T  23455327 ggagctgattcgggttgaaaatacg-aagattgaagacaaaaatat 23455371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 18264686 - 18264630
Alignment:
Q  265 agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccag 320  Q
    |||||||||||||| ||||| |||  ||||||||||||||||||||||||| |||||    
T  18264686 agacaaaaatatgtctcccccaagtcagaagcttggcacggccgtgccacctcccag 18264630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 18273699 - 18273643
Alignment:
Q  265 agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccag 320  Q
    |||||||||||||| ||||| |||  ||||||||||||||||||||||||| |||||    
T  18273699 agacaaaaatatgtctcccccaagtcagaagcttggcacggccgtgccacctcccag 18273643  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 25228457 - 25228517
Alignment:
Q  265 agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    ||||||||||| || ||||| |||  |||||||||||||||||||||||||| ||||||||    
T  25228457 agacaaaaatacgtctcccccaagtcagaagcttggcacggccgtgccaccctccagagtc 25228517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 37300019 - 37299963
Alignment:
Q  265 agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccaccccccag 320  Q
    |||||||||||||| ||||| | || ||||||||||||||||||||||||| |||||    
T  37300019 agacaaaaatatgtctcccccaaatcagaagcttggcacggccgtgccacctcccag 37299963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 43836580 - 43836530
Alignment:
Q  265 agacaaaaatatgttt-ccccaagatagaagcttggcacggccgtgccacc 314  Q
    |||||||||||||| | |||||||  |||||||||||||||||||||||||    
T  43836580 agacaaaaatatgtctaccccaagtcagaagcttggcacggccgtgccacc 43836530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 17516080 - 17516033
Alignment:
Q  270 aaaatatgtttcccc--aagatagaagcttggcacggccgtgccaccc 315  Q
    |||||||||||||||  |||  ||||||||||||||||||||||||||    
T  17516080 aaaatatgtttcccctaaagtcagaagcttggcacggccgtgccaccc 17516033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 23222343 - 23222256
Alignment:
Q  228 ctaggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacgg-ccgtgccacc 314  Q
    ||||||| |||||| | ||||||||||| |||||||| || ||||||| | || ||||||| ||||||||| |||||| ||||||||||    
T  23222343 ctaggagctgattcagattgaaaatacg-aagattgacgagaaaaatacgattcccccaagttagaagcttagcacggcccgtgccacc 23222256  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 25786687 - 25786610
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagatagaagcttggcacggcc 306  Q
    |||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  25786687 taggagctgatttgggttgaaaatatgaaagattgaagacaaaaatatgtttccccaagtcagaagcttggcacggcc 25786610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 22601688 - 22601606
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacggccgtgccac 313  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||  |||||||||||| | |||||||||    
T  22601688 ggagctgattcgggttgaaaatatgaa-gattgaagacaaaaatatgatttccccaagtcagaagcttggcatgcccgtgccac 22601606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 29093302 - 29093388
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacggcc-gtgccacc 314  Q
    |||||| |||||||||||||||||||| |||||| |||||||||||| | || |||||||  ||||||||||||||||| ||||||||    
T  29093302 taggagctgattcgggttgaaaatacg-aagatttaagacaaaaatacgattcccccaagtcagaagcttggcacggcctgtgccacc 29093388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 30245003 - 30245094
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtt-tccccaagatagaagcttggcacggccgtgccaccccccag 320  Q
    |||||| ||||||||||  |||||||||| || ||||||||||||||| |  || |||||  ||||||||||||||||||||||||| |||||    
T  30245003 taggagctgattcgggtgaaaaatacgaa-gactgaagacaaaaatatatcctcaccaagtcagaagcttggcacggccgtgccacctcccag 30245094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 28734483 - 28734399
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgt-ttccccaagatagaagcttggcacggc-cgtgccacc 314  Q
    |||| ||||||||| |||||||||| |||||||||  |||||||||||  ||||||||  |||||||||||||||| |||||||||    
T  28734483 ggagctgattcgggctgaaaatacg-aagattgaatgcaaaaatatgtaatccccaagtcagaagcttggcacggcacgtgccacc 28734399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 22787768 - 22787708
Alignment:
Q  265 agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||| |||||||  | ||||||||||||||||||||||| || ||||||||    
T  22787768 agacaaaaatatgtctccccaaagtcagaagcttggcacggccgtgccatcctccagagtc 22787708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 8603252 - 8603338
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtt-tccccaagatagaagcttggcacggcc-gtgccacc 314  Q
    |||||| ||||||||||  |||||||||| |||||||||||||| ||| || ||||||||  | ||||||||||||||| ||||||||    
T  8603252 taggagctgattcgggtgaaaaatacgaa-gattgaagacaaaagtatattctccccaagtcataagcttggcacggccagtgccacc 8603338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 29360073 - 29360143
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatgtt-tccccaagatagaagcttggcacggcc 306  Q
    ||||||||||  |||||||||| ||||||||| |||||||| || ||||||||  |||||||||||||||||    
T  29360073 tgattcgggtgaaaaatacgaa-gattgaagataaaaatatattctccccaagtcagaagcttggcacggcc 29360143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 24218547 - 24218593
Alignment:
Q  270 aaaatatgtttccccaagat-agaagcttggcacggccgtgccaccc 315  Q
    |||||||||||||||||  | ||||||||||||||||||||||||||    
T  24218547 aaaatatgtttccccaaagtcagaagcttggcacggccgtgccaccc 24218593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 27323334 - 27323274
Alignment:
Q  265 agacaaaaatatgtttccc-caagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    ||||||||||| || |||| ||||  |||| ||||||||||||||||||||| ||||||||    
T  27323334 agacaaaaatacgtctccctcaagtcagaaacttggcacggccgtgccaccctccagagtc 27323274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 28496991 - 28496934
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaa 286  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496991 taggagctgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaa 28496934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 24077017 - 24076957
Alignment:
Q  265 agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||| |||||||  | |||||||||||||||||||||||||| ||||||||    
T  24077017 agacaaaaatatgtctccccaaagtcagaagcttggcacggccgtgccaccctccagagtc 24076957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 22037573 - 22037512
Alignment:
Q  265 agacaaaaatatgtttcccc-aagat-agaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||| ||||| || || |||||||||||||||||||||||||| ||||||||    
T  22037573 agacaaaaatatgtctcccccaaaatcagaagcttggcacggccgtgccaccctccagagtc 22037512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 24178014 - 24177942
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacg 303  Q
    |||| |||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||  | ||||||||||||    
T  24178014 ggagttgattcgggttgaaaatacg-aagattgaatacaaacatatgatttccccaagtcaaaagcttggcacg 24177942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 30949585 - 30949493
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgt-ttccccaagatagaagcttggcacggcc-gtgccaccccccag 320  Q
    |||||| ||||||||||  |||||||||| |||||||||||||||||| |  || |||||  ||||||||||||||||| |||||||| |||||    
T  30949585 taggagctgattcgggtgaaaaatacgaa-gattgaagacaaaaatatatcctcaccaagtcagaagcttggcacggccagtgccacctcccag 30949493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 29562971 - 29563015
Alignment:
Q  261 ttgaagacaaaaatatgtttccccaagatagaagcttggcacggc 305  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||    
T  29562971 ttgaggacaaaaatatgtttccccaagtcagaagcttggcacggc 29563015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 27744799 - 27744873
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtt-tccccaagatagaagcttggcacg 303  Q
    |||||| ||||||||||   ||||||||| |||||||||||||||||| || ||||||||  ||||||||||||||    
T  27744799 taggagctgattcgggtgataaatacgaa-gattgaagacaaaaatatattctccccaagtcagaagcttggcacg 27744873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 33181473 - 33181530
Alignment:
Q  265 agacaaaaatatgtttccc-caagatagaagcttggcacggccgtgccaccccccaga 321  Q
    |||||||||||| | |||| ||||  ||||||||||||||||||||||||| ||||||    
T  33181473 agacaaaaatatatctccctcaagtcagaagcttggcacggccgtgccacctcccaga 33181530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 538955 - 539015
Alignment:
Q  247 gaaaatacgaaagattgaagacaaaaatatgtttcc-ccaagatagaagcttggcacggcc 306  Q
    |||||||||||   ||| |||||||||||||| ||| ||||| ||||||||||||||||||    
T  538955 gaaaatacgaagatttggagacaaaaatatgtctccgccaagttagaagcttggcacggcc 539015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 2721689 - 2721757
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagatagaagcttggcacgg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  2721689 tgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccccaagtctaaagcttggcacgg 2721757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 2005700 - 2005778
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttccc-caagatagaagcttggcacggcc 306  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||  | |||| ||||  |||||||||||||||||    
T  2005700 taggagctgattcaggttgaaaatacgaaagattgaagacaaaaatacatctccctcaagtcagaagcttggcacggcc 2005778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 40846540 - 40846615
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacgg 304  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||  ||||| |||||||||    
T  40846540 taggagctgattcgggatgaaaatacgaa-gattgaagacaaaaatatgttttccccaagtcagaagtttggcacgg 40846615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 51034548 - 51034639
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtt-tccccaagatagaagcttggcacggccgtgccaccccccag 320  Q
    |||||| ||||||||||  ||||||| ||||||||||||| ||||||| || || |||||  ||||||||||||||||||||||||| |||||    
T  51034548 taggagctgattcgggtgaaaaatac-aaagattgaagacgaaaatatattctcaccaagtcagaagcttggcacggccgtgccacctcccag 51034639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 15573688 - 15573623
Alignment:
Q  257 aagattga-agacaaaaatatgtttccc-caagatagaagcttggcacggccgtgccaccccccag 320  Q
    |||||||| |||||||||||||| |||| ||||  |||||||||||||||||||||||||| ||||    
T  15573688 aagattgagagacaaaaatatgtctcccacaagtcagaagcttggcacggccgtgccaccctccag 15573623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 11947820 - 11947888
Alignment:
Q  257 aagattga-agacaaaaatatgtttccc-caagatagaagcttggcacggccgtgccaccccccagagt 323  Q
    |||||||| ||||||||||||||  ||| ||||  |||||||||||||||||||||||||| |||||||    
T  11947820 aagattgagagacaaaaatatgtcacccacaagtcagaagcttggcacggccgtgccaccctccagagt 11947888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 14139712 - 14139656
Alignment:
Q  265 agacaaaaatatgt-ttccccaagatagaagcttggcacggccgtgccaccccccag 320  Q
    ||||||||||| || |||||||||  ||||||||||||||||||||||||| |||||    
T  14139712 agacaaaaatacgtcttccccaagtcagaagcttggcacggccgtgccacctcccag 14139656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 42244887 - 42244808
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacggcc-gtgccacc 314  Q
    |||||||||||||||||||| |||||| || |||||||||||  | |||||||  ||||||||||||||||| ||||||||    
T  42244887 tgattcgggttgaaaatacg-aagattcaatacaaaaatatgactcccccaagtcagaagcttggcacggcctgtgccacc 42244808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 3279587 - 3279647
Alignment:
Q  247 gaaaatacgaaagattgaagacaaaaatatgt-ttccccaagatagaagcttggcacggcc 306  Q
    |||||||||||   ||| |||||||||||||| |||||||||  |||||||||||||||||    
T  3279587 gaaaatacgaagatttggagacaaaaatatgtcttccccaagtcagaagcttggcacggcc 3279647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 5212464 - 5212396
Alignment:
Q  257 aagattga-agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccaccccccagagt 323  Q
    |||||||| |||||||||||||| |||||||  | |||| ||||||||||||||||||||  |||||||    
T  5212464 aagattgagagacaaaaatatgtctccccaaagtcagaaccttggcacggccgtgccaccatccagagt 5212396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 10546725 - 10546673
Alignment:
Q  270 aaaatatgtttccccaagat-agaagcttggcacggccgtgccaccccccaga 321  Q
    ||||||||| |||||||  | |||||||||||||||||||||||||| |||||    
T  10546725 aaaatatgtctccccaaagtcagaagcttggcacggccgtgccaccctccaga 10546673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 11868542 - 11868602
Alignment:
Q  265 agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    ||||||||||| || ||||| ||| |||||  |||||||||||||||||||| ||||||||    
T  11868542 agacaaaaatacgtctcccccaagttagaactttggcacggccgtgccaccctccagagtc 11868602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 42280746 - 42280806
Alignment:
Q  265 agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||| |||||||  | ||||| |||||||||||||||||||| ||| ||||    
T  42280746 agacaaaaatatgtctccccaaagtcagaagtttggcacggccgtgccaccctccatagtc 42280806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 1611776 - 1611855
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacgg-ccgtgccacc 314  Q
    |||||||||||||||||||| |||||| |||||||||||||| |||||||||   ||||||||||||||| ||||||||||    
T  1611776 tgattcgggttgaaaatacg-aagattaaagacaaaaatatgatttccccaattcagaagcttggcacggcccgtgccacc 1611855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 5397538 - 5397599
Alignment:
Q  265 agacaaaaatatgtttcccc--aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||| |||||  |||  |||||||||||||||||||||||||| ||||||||    
T  5397538 agacaaaaatatgtctcccccaaagtcagaagcttggcacggccgtgccaccctccagagtc 5397599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 4090451 - 4090535
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatat-gtttccccaagatagaagcttggcacgg-ccgtgccacc 314  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||  | ||||||||  ||||| ||||||||| ||||||||||    
T  4090451 ggagctgattcaggttgaaaatacgaa-gattgaagacaaaaatataatctccccaagtcagaagattggcacggcccgtgccacc 4090535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 17206740 - 17206656
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacgg-ccgtgccacc 314  Q
    |||| ||||||||| ||||||||| | |||||||||||||||||||| || |||||||  |||||||||||| || ||||||||||    
T  17206740 ggagctgattcgggctgaaaatac-agagattgaagacaaaaatatgattcccccaagtcagaagcttggcatggcccgtgccacc 17206656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 34390425 - 34390482
Alignment:
Q  265 agacaaaaatatgtttccc-caagatagaagcttggcacggccgtgccaccccccaga 321  Q
    |||||||||||| |||||| ||||  ||||||||||||||||||||||||| ||||||    
T  34390425 agacaaaaatatatttccctcaagtcagaagcttggcacggccgtgccacctcccaga 34390482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 27291750 - 27291809
Alignment:
Q  257 aagattga-agacaaaaatatgtttcccca-agatagaagcttggcacggccgtgccacc 314  Q
    |||||||| |||||||||||||| |||||| ||  |||||||||||||||||||||||||    
T  27291750 aagattgagagacaaaaatatgtctccccacagtcagaagcttggcacggccgtgccacc 27291809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 11921110 - 11921049
Alignment:
Q  256 aaagattga-agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccaccc 315  Q
    ||||||||| |||||||||||||| ||| |||  | ||||||||||||||||||||||||||    
T  11921110 aaagattgagagacaaaaatatgtctcctcaaagtcagaagcttggcacggccgtgccaccc 11921049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 16331114 - 16331081
Alignment:
Q  290 agaagcttggcacggccgtgccaccccccagagt 323  Q
    |||||||||||||||||||||||||| |||||||    
T  16331114 agaagcttggcacggccgtgccaccctccagagt 16331081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 11997636 - 11997580
Alignment:
Q  265 agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccag 320  Q
    |||||||||||||| ||||| |||  ||||| ||||||||||||||||||| |||||    
T  11997636 agacaaaaatatgtctcccccaagtcagaagtttggcacggccgtgccacctcccag 11997580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 12575624 - 12575680
Alignment:
Q  265 agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccag 320  Q
    ||||||||||| || ||||| |||  |||||||||||||||||||||||||| ||||    
T  12575624 agacaaaaatacgtctcccccaagtcagaagcttggcacggccgtgccaccctccag 12575680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 28764206 - 28764127
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacggc-cgtgccacc 314  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||||||  | |||||||||||||| |||||||||    
T  28764206 tgattcgggttgaaaatacg-aagaatgaagacaaaaatatgatttccccaagtcataagcttggcacggctcgtgccacc 28764127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 25646584 - 25646510
Alignment:
Q  248 aaaatacgaaagattgaagacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccaga 321  Q
    ||||||||||   ||| |||||||||||||| ||||| |||  ||||||||||||||||||||||||| ||||||    
T  25646584 aaaatacgaagatttggagacaaaaatatgtctcccccaagtcagaagcttggcacggccgtgccacctcccaga 25646510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 13799795 - 13799711
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacgg-ccgtgccacc 314  Q
    |||| ||||||||||||||||||| ||||||| || |||||||||||  | |||||||  ||||||||||||||| ||||||||||    
T  13799795 ggagctgattcgggttgaaaatac-aaagattcaatacaaaaatatgactcccccaagtcagaagcttggcacggcccgtgccacc 13799711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 19788583 - 19788527
Alignment:
Q  265 agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccag 320  Q
    |||||||||||||| ||||| |||  ||||||||||||||||||||||||| |||||    
T  19788583 agacaaaaatatgtctcccccaagtcagaagcttggcacggccgtgccacctcccag 19788527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 319
Target Start/End: Original strand, 4028101 - 4028156
Alignment:
Q  265 agacaaaaatatgtttcc-ccaagatagaagcttggcacggccgtgccacccccca 319  Q
    |||||||||||||| ||| |||||  ||||||||||||||||||||||||| ||||    
T  4028101 agacaaaaatatgtctcctccaagtcagaagcttggcacggccgtgccacctccca 4028156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 25726705 - 25726745
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatg 277  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  25726705 tgattcgggttgacaatacgaa-gattgaagacaaaaatatg 25726745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 25735113 - 25735153
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatg 277  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  25735113 tgattcgggttgacaatacgaa-gattgaagacaaaaatatg 25735153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 103 - 182
Alignment:
Q  247 gaaaatacgaaagattga-agacaaaaatatgtttcccc-aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    ||||||| |||||||||| |||||||||||||| ||||| |||  |||||| ||||||||||||||||||| ||||||||    
T  103 gaaaatatgaaagattgagagacaaaaatatgtctcccccaagtcagaagcctggcacggccgtgccaccctccagagtc 182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 31410 - 31480
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacggcc 306  Q
    ||||| || ||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  31410 tgatttggcttgaaaatacgaa-gattgaagacaaaaatatgatttccgcaagttagaagcttggcacggcc 31480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 40057 - 39972
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatat-gtttccccaagatagaagcttggcacggcc-gtgccaccccccag 320  Q
    |||||||||||||||||||| ||||||||| ||||||||||  | ||||||||  ||||||||||||||||| |||||||| |||||    
T  40057 tgattcgggttgaaaatacg-aagattgaaaacaaaaatataatctccccaagtcagaagcttggcacggccagtgccacctcccag 39972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 9856949 - 9856994
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg 277  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||    
T  9856949 ggagctgattcgggttgaaaatacg-aagattgaagacaaaaatatg 9856994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 15254761 - 15254830
Alignment:
Q  257 aagattga-agacaaaaatatgtttccc-caagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||| ||||||||||| || |||| ||||  |||||||||||||||||||||||||| ||||||||    
T  15254761 aagattgagagacaaaaataggtctcccacaagtcagaagcttggcacggccgtgccaccctccagagtc 15254830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 16218147 - 16218053
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttcccc--aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||   |||||||||||   ||| |||||||| ||||| |||||  |||  |||||||||||||||||||||||||| ||||||||    
T  16218147 ggagatgattcggtacgaaaatacgaagatttggagacaaaa-tatgtctcccccaaagtcagaagcttggcacggccgtgccaccctccagagtc 16218053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 16221467 - 16221373
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatgtttcccc--aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||   |||||||||||   ||| |||||||| ||||| |||||  |||  |||||||||||||||||||||||||| ||||||||    
T  16221467 ggagatgattcggtacgaaaatacgaagatttggagacaaaa-tatgtctcccccaaagtcagaagcttggcacggccgtgccaccctccagagtc 16221373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 3391782 - 3391815
Alignment:
Q  290 agaagcttggcacggccgtgccaccccccagagt 323  Q
    |||||||||||||||||||||||||| |||||||    
T  3391782 agaagcttggcacggccgtgccaccctccagagt 3391815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 15268341 - 15268398
Alignment:
Q  257 aagattga-agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgcca 312  Q
    |||||||| |||||||||||||| |||||||  | |||||||||||||||||||||||    
T  15268341 aagattgagagacaaaaatatgtctccccaaagtcagaagcttggcacggccgtgcca 15268398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1225 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1225
Description:

Target: scaffold1225; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 2073 - 2148
Alignment:
Q  229 taggagatgattcgggttgaaaatacgaaagattgaagacaaaaatatg-tttccccaagatagaagcttggcacgg 304  Q
    |||||| |||||||||||||||||||| |||||||||||||||| || | || |||||||  |||||||||||||||    
T  2073 taggagctgattcgggttgaaaatacg-aagattgaagacaaaattacgattcccccaagtcagaagcttggcacgg 2148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 2309 - 2377
Alignment:
Q  257 aagattga-agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccaccccccagagt 323  Q
    |||||||| |||||||||||||| |||||||  | |||||||||||||||||||||||||| |||||||    
T  2309 aagattgagagacaaaaatatgtctccccaaagtcagaagcttggcacggccgtgccaccctccagagt 2377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 16090 - 16160
Alignment:
Q  256 aaagattga-agacaaaaatatgtttcccca-agatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    ||||||||| |||||||||||||| |||||  ||  |||||||||||||||||||||||||| ||||||||    
T  16090 aaagattgagagacaaaaatatgtctccccctagtcagaagcttggcacggccgtgccaccctccagagtc 16160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 98348 - 98417
Alignment:
Q  257 aagattga-agacaaaaatatgtttccc-caagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||| |||||||||||||| |||| ||||  ||||||||||||||||| |||||||| ||||||||    
T  98348 aagattgagagacaaaaatatgtctcccacaagtcagaagcttggcacggccatgccaccctccagagtc 98417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 154191 - 154096
Alignment:
Q  231 ggagatgattcgggttgaaaatacgaaagatt-gaagacaaaaatatgtttcccc--aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||| ||||||||  |||||||||||| |||| | |||||||||||||| |||||  |||  |||||||||||||||||||||||||| | ||||||    
T  154191 ggagctgattcggtatgaaaatacgaa-gattcggagacaaaaatatgtctcccccaaagtcagaagcttggcacggccgtgccaccctctagagtc 154096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 9898 - 9842
Alignment:
Q  265 agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccaccccccag 320  Q
    |||||||||||||| |||||||  | |||||||||||||||||||||||||| ||||    
T  9898 agacaaaaatatgtctccccaaagtcagaagcttggcacggccgtgccaccctccag 9842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0486 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0486
Description:

Target: scaffold0486; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 12103 - 12043
Alignment:
Q  265 agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||| |||||||  | |||||||||||||||||||||||||  ||||||||    
T  12103 agacaaaaatatgtctccccaaagtcagaagcttggcacggccgtgccaccatccagagtc 12043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 21970 - 21917
Alignment:
Q  270 aaaatatgtttcccc--aagatagaagcttggcacggccgtgccaccccccaga 321  Q
    |||||||||||||||  |||  |||||||||||||||||||||||||| |||||    
T  21970 aaaatatgtttcccccaaagtcagaagcttggcacggccgtgccaccctccaga 21917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 24588 - 24527
Alignment:
Q  265 agacaaaaatatgtttcccc--aagatagaagcttggcacggccgtgccaccccccagagtc 324  Q
    |||||||||||||| |||||  |||  |||||||||||||| ||||||||||| ||||||||    
T  24588 agacaaaaatatgtctcccccaaaggcagaagcttggcacgaccgtgccaccctccagagtc 24527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 520497 - 520577
Alignment:
Q  236 tgattcgggttgaaaatacgaaagattgaagacaaaaatatgttt--ccccaagatagaagcttggcacgg-ccgtgccacc 314  Q
    ||||||||| |||||||||||| |||| || ||||||||||| |   ||||||| |||||||||||||||| ||||||||||    
T  520497 tgattcgggctgaaaatacgaa-gatttaatacaaaaatatgatgtcccccaagttagaagcttggcacggcccgtgccacc 520577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 9076 - 9125
Alignment:
Q  265 agacaaaaatatgtttccccaagat-agaagcttggcacggccgtgccac 313  Q
    |||||||||||||| |||||||  | ||||||||||||||||||||||||    
T  9076 agacaaaaatatgtctccccaaagtcagaagcttggcacggccgtgccac 9125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 5298 - 5331
Alignment:
Q  290 agaagcttggcacggccgtgccaccccccagagt 323  Q
    |||||||||||||||||||||||||| |||||||    
T  5298 agaagcttggcacggccgtgccaccctccagagt 5331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 73439 - 73496
Alignment:
Q  265 agacaaaaatatgtttccc-caagatagaagcttggcacggccgtgccaccccccaga 321  Q
    |||||||||||| | |||| ||||  ||||||||||||||||||||||||| ||||||    
T  73439 agacaaaaatatatctccctcaagtcagaagcttggcacggccgtgccacctcccaga 73496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 164197 - 164156
Alignment:
Q  265 agacaaaaatatgtttccccaagatagaagcttggcacggcc 306  Q
    |||||||||||| | |||||||| ||||||||||||||||||    
T  164197 agacaaaaatatatctccccaagttagaagcttggcacggcc 164156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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