View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_29 (Length: 333)
Name: NF12080_low_29
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 24566246 - 24566425
Alignment:
| Q |
131 |
aacccaatgatcagtatagtcttctacactcgtgatacatgcttgataagaaagactattgcatgaaagaaacatttaatcataaagaaacttttttagt |
230 |
Q |
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| T |
24566246 |
aacccaatgatcagtatagtcttctacactcgtgatacatgcttgataagaaagactattgcatgaaagaaacatttaatcataaagaaacttttttagt |
24566345 |
T |
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| Q |
231 |
acaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccatccaatccacatattatgcagaagac |
310 |
Q |
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| T |
24566346 |
acaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccatccaatccacatattatgcagaagac |
24566425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 24565242 - 24565336
Alignment:
| Q |
18 |
catcataaattagaaaatatataacgataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataa |
117 |
Q |
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| T |
24565242 |
catcataaattagaaaatatataa------ttgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataa |
24565335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 53 - 308
Target Start/End: Complemental strand, 45532795 - 45532545
Alignment:
| Q |
53 |
aaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataagtggtcatattataacccaatgatcagtatagtct |
152 |
Q |
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| T |
45532795 |
aaatctttaaaatgtaatatctttaagaataaaaacttcaaatttttt---attttgaattataattggtcatattataacccaatgatgagtat----t |
45532703 |
T |
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| Q |
153 |
tctacactcgtgatacatgcttgataagaaagactat--tgcatgaaagaaacatttaatcataaagaaacttttttagtacaattgtttatctttctca |
250 |
Q |
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| T |
45532702 |
tctacattcgtgatacatgcttgatatgaaagtctctaatacatgaaagaagcatttcatcacagagaaacttttttagttcaattgtttacctttctca |
45532603 |
T |
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| Q |
251 |
ttctcaaactaaaaataatttttgcaaatacccatccaatccacatattatgcagaag |
308 |
Q |
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| T |
45532602 |
ttctcaaattataaataattttttaaaatacatatccaatccacatattatgcagaag |
45532545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 44 - 310
Target Start/End: Original strand, 44339384 - 44339660
Alignment:
| Q |
44 |
ataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataagtggtcatattataacccaatgatca |
143 |
Q |
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| T |
44339384 |
ataattgtcaaatctaaaaaaagaaatatcatgaagaataaaaactgctaat---tttatactttgaattataattggtcatattataactcaatgatga |
44339480 |
T |
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| Q |
144 |
gtatagtctt-------ctacactcgtgatacat--gcttgataagaaaga----ctattgcatgaaagaaacatttaatcataaagaaacttttttagt |
230 |
Q |
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|| ||||||| ||| |||||||||| || | |||||| |||| |||||||||||||||| |||||||||| |||||| |||||||||| |
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| T |
44339481 |
gtgtagtcttgagtcttctaaactcgtgatatatatgtttgatatcaaagtgtctctattgcatgaaagaagcatttaatcacaaagaagcttttttagt |
44339580 |
T |
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| Q |
231 |
acaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccatccaatccacatattatgcagaagac |
310 |
Q |
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| T |
44339581 |
acaattgtttatctttcttattctcaaactgtaagtagtttttgcaaatatccatctgattcacatatcatgtagaagac |
44339660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 44335431 - 44335307
Alignment:
| Q |
186 |
ctattgcatgaaagaaacatttaatcataaagaaacttttttagtacaattgtttatctttctcattctcaaactaaaaataatttttgcaaatacccat |
285 |
Q |
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|||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| || || |||||||||||| ||| |
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| T |
44335431 |
ctattgcatgaaagaagcatttaatcacaaagaagcttttttagtacaattgtttatctttcttattctcaaactgtaagtagtttttgcaaatattcat |
44335332 |
T |
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| Q |
286 |
ccaatccacatattatgcagaagac |
310 |
Q |
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| T |
44335331 |
ctgattcacatatcatgcataagac |
44335307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 44335590 - 44335504
Alignment:
| Q |
44 |
ataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataagtggtcatattataac |
133 |
Q |
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||||||||||||||| ||||||| |||||| ||||||||||||||| ||| |||| || |||||||||||| |||| |||||||||| |
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| T |
44335590 |
ataattgtcaaatctaaaaaaagaaatatcatgaagaataaaaactgctaa---ttttatactttgaattataactggtaatattataac |
44335504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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