View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_31 (Length: 302)
Name: NF12080_low_31
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 28018439 - 28018165
Alignment:
| Q |
10 |
atgagataaggtttgatgatgtgtatacaagtggtattgtaagaaatgaattaggttcaacccaaatttcaaaatattataaaataaactaatttggacc |
109 |
Q |
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| T |
28018439 |
atgagataaggtttgataatgtgtatacaagtggtactgtaagaaatgagttaggttcaagccaaatttcaaaatattataaaatcaactaatttggacc |
28018340 |
T |
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| Q |
110 |
gcctaccatttatattcatgcaccaagcacaatagagttgcatttattgagaatatcaaagtcccgcatagaaaatagatacgttgtgaaaaatgtgttt |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||| |
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| T |
28018339 |
acctatcatttatattcatgcaccaagcacaatagagttgcatttattgagaagatcaaagtcccacatagaacatagataagttgtgaaaaatgtgttt |
28018240 |
T |
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| Q |
210 |
ataagtgatgggtggtcctaacattgaaagacaattttgcaagggttgagttagacctaatccaaattttaaagc |
284 |
Q |
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| T |
28018239 |
ataagtgatgggtggtcctaacattgaaagacaattttgcaagggttgagttagacctaatccaaattttaaagc |
28018165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 27917632 - 27917527
Alignment:
| Q |
176 |
catagaaaatagatacgttgtgaaaaatgtgtttataagtgat-gggtggtcctaacattgaaagacaattttgcaagggttgagttagacctaatccaa |
274 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| || |||||| ||||||||||||||| ||| ||||||||||| |
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| T |
27917632 |
catagaaaatagatgagttgtgaaaaatgtgtttataagtgatggggtgatcctaaccttacaagacagttttgcaagggttgactta-acctaatccaa |
27917534 |
T |
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| Q |
275 |
attttaa |
281 |
Q |
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||||||| |
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| T |
27917533 |
attttaa |
27917527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 28036100 - 28036002
Alignment:
| Q |
46 |
ttgtaagaaatgaattaggttcaacccaaatttcaaaatattataaaataaactaatttggaccgcctaccatttatattcatgcaccaagcacaatag |
144 |
Q |
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| T |
28036100 |
ttgtaagaaatgaattaggttctacccaaatttaaatatagtataaagtcaactaatttggaccacccattatttatattcacacaccaagcacaatag |
28036002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 27921867 - 27921779
Alignment:
| Q |
46 |
ttgtaagaaatgaattaggttcaacccaaatttcaaaatattataaaataaactaatttggaccgcctaccatttatattcatgcacca |
134 |
Q |
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| T |
27921867 |
ttgtaagaaatgagttaggctcaacccaaattttaaaatagtataaagtcaactaatttggaccactcatcatttatattcatgcacca |
27921779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 28074951 - 28074848
Alignment:
| Q |
178 |
tagaaaatagatacgttgtgaaaaatgtgtttataagtgatgggtggtcctaacattgaaagacaattttgcaagggttgagttagacctaatccaaatt |
277 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||| |||| ||| | ||||||||||||||| ||||||||||||| | ||||||||| |
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| T |
28074951 |
tagaaaatatataagttgtgaaaaatgtgtttataagtgatgcgtggaaaaaacctaacaagacaattttgcaaaggttgagttagacttgatccaaatt |
28074852 |
T |
|
| Q |
278 |
ttaa |
281 |
Q |
| |
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|||| |
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| T |
28074851 |
ttaa |
28074848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 27916928 - 27916822
Alignment:
| Q |
168 |
aagtcccgcatagaaaatagatacgttgtgaaaaatgtgtttataagtgatgggtggtcctaacattgaaagacaa-ttttgcaagggttgagttagacc |
266 |
Q |
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||||||||| ||||||| ||||| | | |||||| |||||||||||||| |||||||||||||| || | | |||| ||||| |||| |||||||||||| |
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| T |
27916928 |
aagtcccgcgtagaaaagagataagatttgaaaattgtgtttataagtggtgggtggtcctaacctt-acaaacaagttttgtaaggattgagttagacc |
27916830 |
T |
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| Q |
267 |
taatccaa |
274 |
Q |
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|| ||||| |
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| T |
27916829 |
tattccaa |
27916822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 28035992 - 28035946
Alignment:
| Q |
178 |
tagaaaatagatacgttgtgaaaaatgtgtttataagtgatgggtgg |
224 |
Q |
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||||||||||| | ||||||||||||||||||||| |||||||||| |
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| T |
28035992 |
tagaaaatagaaaagttgtgaaaaatgtgtttatatctgatgggtgg |
28035946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 28003635 - 28003587
Alignment:
| Q |
96 |
aactaatttggaccgcctaccatttatattcatgcaccaagcacaatag |
144 |
Q |
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|||||||||||||| || | |||| ||||||| |||||||||||||||| |
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| T |
28003635 |
aactaatttggaccaccaatcattcatattcacgcaccaagcacaatag |
28003587 |
T |
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