View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12080_low_33 (Length: 295)
Name: NF12080_low_33
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 18889976 - 18890191
Alignment:
| Q |
1 |
agagaacaacaggaatagcttgagcttgaactaacgttggatcttcaaaacccattctttctgttcaaaaagatacaaaatttggataatttaagcttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18889976 |
agagaacaacaggaatagcttgagcttgaactaacgttggaccttcaaaacccattctttctgttcaaaaagatacaaaatttggataatttaagcttgc |
18890075 |
T |
|
| Q |
101 |
taataatttagaaaacgaaataaagagataggaatgaaaaa----atgtacctcgaagttggtcacataaggtttggtgaagaccaaggctagaaaagga |
196 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18890076 |
taataatttagaacacgaaataaagagataagaaggaaaaagaaaagttaccacgaagttggtcacataaggtttggtgaagaccaaggctagagaagga |
18890175 |
T |
|
| Q |
197 |
acaggaagcaaaaaca |
212 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
18890176 |
acaagaagcaaaaaca |
18890191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21842862 - 21842932
Alignment:
| Q |
1 |
agagaacaacaggaatagcttgagcttgaactaacgttggatcttcaaaacccattctttctgttcaaaaa |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||| |||| |
|
|
| T |
21842862 |
agagaacaacaggaatagcttgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaa |
21842932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21898725 - 21898795
Alignment:
| Q |
1 |
agagaacaacaggaatagcttgagcttgaactaacgttggatcttcaaaacccattctttctgttcaaaaa |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||| |||| |
|
|
| T |
21898725 |
agagaacaacaggaatagcttgagcttgaattaatgttggagcttcaaaacccattctttctgttccaaaa |
21898795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 21843020 - 21843086
Alignment:
| Q |
145 |
tacctcgaagttggtcacataaggtttggtgaagaccaaggctagaaaaggaacaggaagcaaaaac |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
21843020 |
taccacgaagttggtcacataaggtttggtgaagaccgagactagaaaaggaacatgaagcaaaaac |
21843086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 21898883 - 21898949
Alignment:
| Q |
145 |
tacctcgaagttggtcacataaggtttggtgaagaccaaggctagaaaaggaacaggaagcaaaaac |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
21898883 |
taccacgaagttggtcacataaggtttggtgaagaccgagactagaaaaggaacatgaagcaaaaac |
21898949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University