View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_36 (Length: 284)
Name: NF12080_low_36
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_36 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 1738782 - 1739053
Alignment:
| Q |
8 |
caaaggagtaccaaatcacctacttcaaagtattaatgaataaaagtaaacgaaactaagagaaag---------tcgaataactcctcaagtctccttc |
98 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
1738782 |
caaaggagtaccaagtcacgtacttcaaagtattaacgaataaaagtaaacgaaactaagagaaaggctgccacgtcgaacaactcctcaagtctccttc |
1738881 |
T |
|
| Q |
99 |
gccatggctttatcagttcacttatccgtaaacatgcaaactaattggaatgaaaatacatctcagtgagttcataaataaatcatacctatacctcgcc |
198 |
Q |
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||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||| |
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| T |
1738882 |
gccttggatttatcagttcacttatctgtaaacatgcaaactaattggaatgagaatacatctcagtgaattcataaataaatcatacttgtacctcgcc |
1738981 |
T |
|
| Q |
199 |
tcatcggcaataattattaagctcttgcatataaaattctcacaaactacttgattgtacctagatactata |
270 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
1738982 |
tcatcgacaataattattaagctcttgcatataaaattctcactaactatttgataatacctagatactata |
1739053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 5542150 - 5542275
Alignment:
| Q |
8 |
caaaggagtaccaaatcacctacttcaaagtattaatgaataaaagtaaacgaaactaagagaaa---------gtcgaataactcctcaagtctccttc |
98 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| || |
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| T |
5542150 |
caaaggagtatcaaatcacgtacttcaaagtattaacgaataaaagtaaacgaaactaagagaaaggctgccacgtcgaacaactcctcaagtctccatc |
5542249 |
T |
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| Q |
99 |
gccatggctttatcagttcacttatc |
124 |
Q |
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||| |||||||||||||||||||||| |
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| T |
5542250 |
gccttggctttatcagttcacttatc |
5542275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 18354046 - 18353830
Alignment:
| Q |
9 |
aaaggagtaccaaatcacctacttcaaagtattaatgaataaaagtaaacgaaactaagagaaag---------tcgaataactcctcaagtctccttcg |
99 |
Q |
| |
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|||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
18354046 |
aaaggagtcccaaattacgtacttcaaagtattaatgaataaaagtaaacgaaactaagagaaaggctgccacgtcgaacaactcctcaagtctccttcg |
18353947 |
T |
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| Q |
100 |
ccatggctttatcagttcacttatccgtaaacatgcaaactaattggaatgaaaatacatctcagtgagttcataaataaatcatacctatacctcgcct |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18353946 |
ccttggctttatcagttcacttatccgtaaacatgcaaactaattggaatgagaatacatctcagtgagttcataaataaatcatacctatacctcgcct |
18353847 |
T |
|
| Q |
200 |
catcggcaataattatt |
216 |
Q |
| |
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||||||||||||||||| |
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| T |
18353846 |
catcggcaataattatt |
18353830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 66271 - 66435
Alignment:
| Q |
73 |
gtcgaataactcctcaagtctccttcgccatggctttatcagttcacttatccgtaaacatgcaaactaattggaatgaaaatacatctcagtgagttca |
172 |
Q |
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|||||| |||| |||||||||||||||| |||||||| | ||||||||||| ||| |||||||||||||||||||| | ||||||||||| ||| |||| |
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| T |
66271 |
gtcgaacaactattcaagtctccttcgccttggctttacccgttcacttatctgtagacatgcaaactaattggaataagaatacatctcattgaattca |
66370 |
T |
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| Q |
173 |
taaataaatcatacctatacctcgcctcatcggcaataattattaagctcttgcatataaaattct |
238 |
Q |
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|||||||||||||| ||||| || || | || ||||||| || |||| || ||||||||||||||| |
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| T |
66371 |
taaataaatcatacttatacttcaccgcttctgcaataaata-taagttcctgcatataaaattct |
66435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 18863680 - 18863805
Alignment:
| Q |
8 |
caaaggagtaccaaatcacctacttcaaagtattaatgaataaaagtaaacgaaactaagagaaag---------tcgaataactcctcaagtctccttc |
98 |
Q |
| |
|
||||| |||||||| ||| ||||||||| |||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
18863680 |
caaagaagtaccaagtcatgtacttcaaattattaacgaatagaagtaaacgaaactaagagaaaggctgccatgtcgaacaactcctcaagtctccttc |
18863779 |
T |
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| Q |
99 |
gccatggctttatcagttcacttatc |
124 |
Q |
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||| |||||||| ||||||||||||| |
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| T |
18863780 |
gccttggctttaccagttcacttatc |
18863805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 18868831 - 18868953
Alignment:
| Q |
9 |
aaaggagtaccaaatcacctacttcaaagtattaatgaataaaagtaaacgaaactaagaga-------aagtcgaataactcctcaagtctccttcgcc |
101 |
Q |
| |
|
|||||||||| || |||| ||||||||| |||||| |||| || ||||||||||||||| | | ||||| |||||||||||||||||||||| |
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| T |
18868831 |
aaaggagtactaagtcacgtacttcaaattattaacaaatagaaataaacgaaactaagaaaggttgccacatcgaacaactcctcaagtctccttcgcc |
18868930 |
T |
|
| Q |
102 |
atggctttatcagttcacttatc |
124 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
18868931 |
ttggctttaccagttcacttatc |
18868953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 43278355 - 43278236
Alignment:
| Q |
7 |
gcaaaggagtaccaaatcacctacttcaaagtattaatgaataaaagtaaacgaaactaagagaaagtc---------gaataactcctcaagtctcctt |
97 |
Q |
| |
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|||||||||||| || |||| ||||||||| |||||| ||||||||||||| ||||||| |||||| | ||| |||||||||||||||||| |
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| T |
43278355 |
gcaaaggagtac-aagtcacatacttcaaattattaacaaataaaagtaaacaaaactaaaagaaaggctgccacgttgaacaactcctcaagtctcctt |
43278257 |
T |
|
| Q |
98 |
cgccatggctttatcagttca |
118 |
Q |
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|||| |||||||||||||||| |
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| T |
43278256 |
cgccttggctttatcagttca |
43278236 |
T |
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