View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12080_low_4 (Length: 812)
Name: NF12080_low_4
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_4 |
 | |
|
| [»] scaffold0075 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 19 - 805
Target Start/End: Original strand, 1688556 - 1689356
Alignment:
| Q |
19 |
cctccttcttccaccccaatccatcaaacttagcccaatcttaatgaatatcaacatgcaagcttcaaatcttgacccttggaacaatttaaaccttatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1688556 |
cctccttcttccaccccaatccatcaaagttagcccaattgtaatggaaatcaacatgcaagcttcaaatcttgatccttggaacaatttaaaccttatg |
1688655 |
T |
|
| Q |
119 |
caagattaaaattcttctttcctttcctcttttccctcctagatgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1688656 |
caagattaaaattcttctttcctttcctcttttccctcctagctgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagag |
1688755 |
T |
|
| Q |
219 |
tagaaattaagttgttgtgctgattatgacttgaattgatgattataagtaacaaataaggaagaatgaggctagggtttggttgttctgttggaagaga |
318 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1688756 |
tggcaattaagttgttgtgctgattatgacttgaattgatgattagaagtaagaaataaggaagaatgaggctagggtttggttgttctgctggaagagt |
1688855 |
T |
|
| Q |
319 |
gggtatgtatgtgtgaatatttatccattttgatttggtttggcaatagaaacaagaaatttgcagaaaaaggattactgaaagtttgggtcaaagctgg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1688856 |
gggtatgtatgtgtgaatatttatccattgtgatttggtttggcaatagaaacaagaaatttgcagaaaaaggattactgaaagtttgggtcaaagctgg |
1688955 |
T |
|
| Q |
419 |
attttggagagttgagtagagaaattgaagttttgcagaaggctgaaactatgagctggagataagcttaatctgattcagaaggttatggtaagttctc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1688956 |
attttggagagttgagtagagaaattgaagttttgcagaaggcagagactatgagctggagataagcttaatctgattcagaaggttatggtaagttctc |
1689055 |
T |
|
| Q |
519 |
tattaaacttgaatttgattagatagagaaggatttgttagttggttatggtgtaattttaagaaatgttgattaaaattcgtatagacatactgtcaga |
618 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
1689056 |
tattaaacttgaatttaattagatagagaaggatttgttagttggttatggtgtaattttaagaaatgttggttaaaattcgtatagacctactgtcaga |
1689155 |
T |
|
| Q |
619 |
aaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaaatagacaaaatttaacatgaaataggctctggaagaactt |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
1689156 |
aaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaaatagacaaaatttaacacgaaataggctctggaagcactt |
1689255 |
T |
|
| Q |
719 |
aattt--------------tgagaaaattgagttagaagtttgagctgctgaagtaaaaatctgaactgttgttgttggaatgttctatcatatctctct |
804 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
1689256 |
aattttgttattctatgactgagaaaattgagttagaagtttgagctgctgaagtaaaaatctgaactgttgttgttggaatgttctgtcatatctatct |
1689355 |
T |
|
| Q |
805 |
g |
805 |
Q |
| |
|
| |
|
|
| T |
1689356 |
g |
1689356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 379 - 805
Target Start/End: Original strand, 5478941 - 5479381
Alignment:
| Q |
379 |
ttgcagaaaaaggattactgaaagtttgggtcaaagctggattttggagagttgagtagagaaattgaagttttgcagaaggctgaaactatgagctgga |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5478941 |
ttgcagaaaaaggattactgaaagtttgggtcaaagctatattttggagagttgagtagagaaattgaagttttgcagaaggcagaaactatgagctgga |
5479040 |
T |
|
| Q |
479 |
gataagcttaatctgattcagaaggttatggtaagttctctattaaacttgaatttgattagatagagaaggatttgttagttggttatggtgtaatttt |
578 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5479041 |
gataagcttaatctgattcagaaggttatagtaagttctctattaaacttgaatttgattagatagagaaggatttgttagttggttatggtgtaatttt |
5479140 |
T |
|
| Q |
579 |
aagaaatgttgattaaaattcgtatagacatactgtcagaaaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaa |
678 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5479141 |
aagaaatgttggttaaaatttgtatagacctactgtcagaaaaacggtcataaatacttgtgctggcatcatttttgagtgaaaattgaaccattggaaa |
5479240 |
T |
|
| Q |
679 |
atagacaaaatttaacatgaaataggctctggaagaacttaattt--------------tgagaaaattgagttagaagtttgagctgctgaagtaaaaa |
764 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
5479241 |
atagacaaaatttaacacgaaataggctctggaagaacttaattttgttattctatgactgagaaaattgagttagaagtttgaactgccgaagtaaaaa |
5479340 |
T |
|
| Q |
765 |
tctgaactgttgttgttggaatgttctatcatatctctctg |
805 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5479341 |
tctgaactgttgttgttggaatgttctgtcatatctctctg |
5479381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 379 - 805
Target Start/End: Complemental strand, 45007796 - 45007356
Alignment:
| Q |
379 |
ttgcagaaaaaggattactgaaagtttgggtcaaagctggattttggagagttgagtagagaaattgaagttttgcagaaggctgaaactatgagctgga |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45007796 |
ttgcagaaaaaggattactgaaagtttgggtcaaagctatattttggagagttgagtagagaaattgaagttttgcagaaggcagaaactatgagctgga |
45007697 |
T |
|
| Q |
479 |
gataagcttaatctgattcagaaggttatggtaagttctctattaaacttgaatttgattagatagagaaggatttgttagttggttatggtgtaatttt |
578 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45007696 |
gataagcttaatctgattcagaaggttatagtaagttctctattaaacttgaatttgattagatagagaaggatttgttagttggttatggtgtaatttt |
45007597 |
T |
|
| Q |
579 |
aagaaatgttgattaaaattcgtatagacatactgtcagaaaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaa |
678 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45007596 |
aagaaatgttggttaaaatttgtatagacctactgtcagaaaaacggtcataaatacttgtgctggcatcatttttgagtgaaaattgaaccattggaaa |
45007497 |
T |
|
| Q |
679 |
atagacaaaatttaacatgaaataggctctggaagaacttaattt--------------tgagaaaattgagttagaagtttgagctgctgaagtaaaaa |
764 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
45007496 |
atagacaaaatttaacacgaaataggctctggaagaacttaattttgttattctatgactgagaaaattgagttagaagtttgaactgccgaagtaaaaa |
45007397 |
T |
|
| Q |
765 |
tctgaactgttgttgttggaatgttctatcatatctctctg |
805 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45007396 |
tctgaactgttgttgttggaatgttctgtcatatctctctg |
45007356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 379 - 805
Target Start/End: Complemental strand, 2684371 - 2683931
Alignment:
| Q |
379 |
ttgcagaaaaaggattactgaaagtttgggtcaaagctggattttggagagttgagtagagaaattgaagttttgcagaaggctgaaactatgagctgga |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2684371 |
ttgcagaaaaaggattactgaaagtttgggtcaaagctatattttggagagttgagtagagaaattgaagttttgcagaaggcagaaactatgagctgga |
2684272 |
T |
|
| Q |
479 |
gataagcttaatctgattcagaaggttatggtaagttctctattaaacttgaatttgattagatagagaaggatttgttagttggttatggtgtaatttt |
578 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2684271 |
gataagcttaatctgattcagaaggttatagtaagttctctattaaacttgaatttgattagatagagaaggatttgttagttggttatggtgtaatttt |
2684172 |
T |
|
| Q |
579 |
aagaaatgttgattaaaattcgtatagacatactgtcagaaaaacggtcataaatacttgtgctggcatcgtttttgagtgaaaattgaaccattggaaa |
678 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2684171 |
aagaaatgttggttaaaattagtatagacctactgtcagaaaaacggtcataaatacttgtgctggcatcatttttgagtgaaaattgaaccattggaaa |
2684072 |
T |
|
| Q |
679 |
atagacaaaatttaacatgaaataggctctggaagaacttaattt--------------tgagaaaattgagttagaagtttgagctgctgaagtaaaaa |
764 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
2684071 |
atagacaaaatttaacacgaaataggctctggaagaacttaattttgttattctatgactgagaaaattgagttagaagtttgaactaccgaagtaaaaa |
2683972 |
T |
|
| Q |
765 |
tctgaactgttgttgttggaatgttctatcatatctctctg |
805 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2683971 |
tctgaactgttgttgttggaatgttctgtcatatctctctg |
2683931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 7e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 19052582 - 19052796
Alignment:
| Q |
20 |
ctccttcttccaccccaatccatcaaacttagcccaatcttaatgaatatcaacatgcaagcttcaaatcttgacccttggaacaatttaaaccttatgc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
19052582 |
ctccttcttccaccccaatccatcaaacttagctcaattttaatggaaatcaacatgcaagcttcaaatcttgatccttcgaacaatttaaaccttatgc |
19052681 |
T |
|
| Q |
120 |
aagattaaaattcttctttcctttcctcttttccctcctagatgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagagt |
219 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
19052682 |
aagattaaaattcttctttcctttccttttttccctcttagctggactcaaccacaagctcataagttttgaactgttgccatcagattgtttagaaagt |
19052781 |
T |
|
| Q |
220 |
agaaattaagttgtt |
234 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
19052782 |
agcaattaggttgtt |
19052796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 25717545 - 25717580
Alignment:
| Q |
162 |
tgaactcaaccacaagctcacaagttttgaattgtt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25717545 |
tgaactcaaccacaagctcacaagttttgaactgtt |
25717580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 29684478 - 29684553
Alignment:
| Q |
162 |
tgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagagtagaaattaagttgttgtg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
29684478 |
tgaactcaaccacaagctcacaagttttgaactgttgccatcagattgtttagaaagtagcaattaagttgttgtg |
29684553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 646 - 704
Target Start/End: Original strand, 31402567 - 31402625
Alignment:
| Q |
646 |
atcgtttttgagtgaaaattgaaccattggaaaatagacaaaatttaacatgaaatagg |
704 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31402567 |
atcgtttttgaatgagacttgaaccattggaaaatagacaaaatttaacacgaaatagg |
31402625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 22913793 - 22913868
Alignment:
| Q |
162 |
tgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagagtagaaattaagttgttgtg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
22913793 |
tgaactcaaccacaagctcacaagttttgaactgttgccatcagattgtttagaaagtagcaattaaattgttgtg |
22913868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 10346 - 10303
Alignment:
| Q |
194 |
tgttgccatcagattgtttagagagtagaaattaagttgttgtg |
237 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
10346 |
tgttgccatcagattgtttagaaagtagcaattaaattgttgtg |
10303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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