View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_41 (Length: 243)
Name: NF12080_low_41
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 44806607 - 44806733
Alignment:
| Q |
111 |
taaattctaagggagtgtttgtttcatagattctaaatatattcctggaaattcagggttggaaattaaaa--ctcgtgtttcttacaatcgaaccaata |
208 |
Q |
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| T |
44806607 |
taaattctaagggagtgtttgtttcatagattctaaatatattcctggaaattcagggttggaaattaaaactctcgtgcttcttacaatggaaccaata |
44806706 |
T |
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| Q |
209 |
atagttcccaggaaataatgatgtcca |
235 |
Q |
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| T |
44806707 |
atagttcccaggaaataatgatgtcca |
44806733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 43056695 - 43056804
Alignment:
| Q |
5 |
gtctttacacgctcaaaagtatat-aatggagttctccatttcttttgcgaaatgaagacgatctctacttaaaaggaatgatgcatctaactctctaag |
103 |
Q |
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|||||||||| ||||||||||||| |||| ||||||| ||||||||| |||||||||||| |||||||||| |||||||||| | |||||||||| ||| |
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| T |
43056695 |
gtctttacacactcaaaagtatattaatgcagttctcaatttcttttacgaaatgaagacaatctctacttgaaaggaatgaggaatctaactcttaaag |
43056794 |
T |
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| Q |
104 |
cattatctaa |
113 |
Q |
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| T |
43056795 |
cattatctaa |
43056804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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