View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_42 (Length: 241)
Name: NF12080_low_42
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 1383377 - 1383587
Alignment:
| Q |
20 |
cctgtgtggttgatatggcagcaaagtttatcatattcacaaaatggtattatgaagcattaccacaatttataagaccataatattggaaatagaaaaa |
119 |
Q |
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| T |
1383377 |
cctgtgtggttgatatggcagcaaagtttatcatattcacaaaatggtattatgaagcattaccacaatttataagaccataatattggaaatagaaaaa |
1383476 |
T |
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| Q |
120 |
taaaaacattatataaagcaagtttgagtataggctgtgcaattcaagcagaa-tatatcttactagtgaacaaagtaggggagaaaaacatggcttcct |
218 |
Q |
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| T |
1383477 |
taaaaacattatataaagcaagtttgagtataggctttgcaattcaagcagaagtatatcttactagtgaacaaagtaagggagaaaaacatggcttcct |
1383576 |
T |
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| Q |
219 |
ctatgatgtcc |
229 |
Q |
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||||||||||| |
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| T |
1383577 |
ctatgatgtcc |
1383587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 1389482 - 1389692
Alignment:
| Q |
20 |
cctgtgtggttgatatggcagcaaagtttatcatattcacaaaatggtattatgaagcattaccacaatttataagaccataatattggaaatagaaaaa |
119 |
Q |
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| T |
1389482 |
cctgtgtggttgatatggcagcaaagtttatcatattcacaaaatggtattatgaagcattaccacaatttataagaccataatattggaaatagaaaaa |
1389581 |
T |
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| Q |
120 |
taaaaacattatataaagcaagtttgagtataggctgtgcaattcaagcagaa-tatatcttactagtgaacaaagtaggggagaaaaacatggcttcct |
218 |
Q |
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| T |
1389582 |
taaaaacattatataaagcaagtttgagtataggctttgcaattcaagcagaagtatatcttactagtgaacaaagtaagggagaaaaacatggcttcct |
1389681 |
T |
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| Q |
219 |
ctatgatgtcc |
229 |
Q |
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||||||||||| |
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| T |
1389682 |
ctatgatgtcc |
1389692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 1373099 - 1373311
Alignment:
| Q |
20 |
cctgtgtggttgatatggcagcaaagtttatcatattcacaa-------aatggtattatgaagcattaccacaatttataagaccataatattggaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373099 |
cctgtgtggttgatatggcagcaaagtttatcatattcacaaccaacaaaatggtattatgaagcattaccacaatttataagaccataatattggaaat |
1373198 |
T |
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| Q |
113 |
agaaaaataaaaacattatataaagcaagtttgagtataggctgtgcaattcaagcagaa-tatatcttactagtgaacaaagtaggggagaaaaacatg |
211 |
Q |
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| T |
1373199 |
agaaaattaaaaatagtatatata-taagtttgagtataggttttgcaattcaagcagaagtatatcttactagtgaac----taagggagaaaaacatg |
1373293 |
T |
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| Q |
212 |
gcttcctctatgatgtcc |
229 |
Q |
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| T |
1373294 |
gcttcctctatgatgtcc |
1373311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 1357811 - 1357964
Alignment:
| Q |
79 |
ttaccacaatttataagaccataatattggaaatagaaaaataaaaacattatataaagcaagtttgagtataggctgtgcaattcaagcagaa-tatat |
177 |
Q |
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|||||||||||| || |||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| || ||||||||||||| ||||| |
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| T |
1357811 |
ttaccacaatttttagaaccataatattggaaatacaaaaataaagacattatatatagcaagtttgagtataggctttgaaattcaagcagaagtatat |
1357910 |
T |
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| Q |
178 |
c-----ttactagtgaacaaagtaggggag-aaaaacatggcttcctctatgat |
225 |
Q |
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| T |
1357911 |
cttacattactagtgaactaagtaagggagaaaaaaaatggcttcctctatgat |
1357964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 1349869 - 1349963
Alignment:
| Q |
78 |
attaccacaatttataagaccataatattggaaatagaaaaataaaaa-cattatataaagcaagtttgagtataggctgtgcaattcaagcagaa |
172 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| | ||| ||||||||||| |||| |
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| T |
1349869 |
attaccacaatat-taagaccataatattggaaatagaaaaataaaaaccattatatatagcaagttttagtagaagctttgcaattcaagtagaa |
1349963 |
T |
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