View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_43 (Length: 241)
Name: NF12080_low_43
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_43 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 36152008 - 36152134
Alignment:
| Q |
115 |
aaaagacattgctaggtttgggatatagtagagacgtaagagtatggaagatttaattagaatcttgaggtgcagacgatacatatgttaagatcaatac |
214 |
Q |
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| T |
36152008 |
aaaagacattgctaggtttgggatatagtagagacgtaaaagtatggaagatttaattagaatcttgaggtgcagacgattcatatgttaagatcaatac |
36152107 |
T |
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| Q |
215 |
aaaataaataatggaattaagtataat |
241 |
Q |
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| T |
36152108 |
aaaataaataatggaattaagtataat |
36152134 |
T |
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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 36151915 - 36151956
Alignment:
| Q |
26 |
caaaattgaaaatttcatataaactaaaaatatatttaacct |
67 |
Q |
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| T |
36151915 |
caaaattgaaaatttcatataaactataaatatatttaacct |
36151956 |
T |
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