View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_47 (Length: 238)
Name: NF12080_low_47
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44848340 - 44848117
Alignment:
| Q |
1 |
attctaaattcacattcaagtataaatctaagttatttgtcatagnnnnnnnttccaaataaaatatatcattcaattttgtcattccgacaactcttaa |
100 |
Q |
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| T |
44848340 |
attctaaattcacattcaagtataaatctaagttatttgtcatagaaaaaaattccaaataaaatatatcattcaattttgtcattccgacaactcttaa |
44848241 |
T |
|
| Q |
101 |
ggatgaaaatattgaataaccaccaaattggtcgttgaaattataatcagctgataatttggttaaactataaattcgtcaataaaaac-atatgcaata |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44848240 |
ggatgaaaatattgaataaccaccaaattggtcgttgaaattataatcagctgataatttggttaaactataaattcgtcaataaaaactttatgcaata |
44848141 |
T |
|
| Q |
200 |
tcatcaacgtctaatgttatatat |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
44848140 |
tcatcaacgtctaatgttatatat |
44848117 |
T |
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