View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12080_low_5 (Length: 803)
Name: NF12080_low_5
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12080_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 311 - 785
Target Start/End: Complemental strand, 46952367 - 46951893
Alignment:
| Q |
311 |
gataaagataatgtagcgttattgtgaaaaagagaatatgtcggcatcatgtactaaaaa-taataataattccactttaacaaatataccgacctcctt |
409 |
Q |
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| T |
46952367 |
gataaagata-tgtagcgttattgtgaaaaagagaatatgtcggcatcatgtattaaaaaataataataattacactttaacaaatataccgacctcttt |
46952269 |
T |
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| Q |
410 |
tttgttgagctgtagcatcttggaatgaatatctaaaagtctagaggtaaattcgtccacttgcttagttctgcattgagataagaaagagacaattaaa |
509 |
Q |
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| T |
46952268 |
tttgttgagctgtagcatcttggaatgaatatctaaaagtctagaggtaaattcgtccacttgcttagttctgcattgagataagaaagagacaattaaa |
46952169 |
T |
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| Q |
510 |
agctgaaaatggaaaagacgtagaaacacaccaaaagggtgacccacttgtgataatgaataaaaaacaatagagcaacagtgaattagaacggaccttg |
609 |
Q |
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| T |
46952168 |
agctgaaaatggaaaagacgtagaaacacaccaaaagggtgacccacttgtgataatgaataaaaaacaatagagcaacagtgaattagaacggaccttg |
46952069 |
T |
|
| Q |
610 |
agagagattcttgaagaaatttaccatctaaactaacacggtcaacaagttcattgaatataggtgccaaatcacaagcttgcttccatttactttctgg |
709 |
Q |
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| T |
46952068 |
agagagattcttgaagaaatttaccatctaaactaacacggtcaacaagttcattgaatataggtgccaaatcacaagcttgcttccatttactttctgg |
46951969 |
T |
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| Q |
710 |
aaacgacgttgggaataatgaaaacggggcatgcatcaatccaacaccaggaatcattcctgatttctgtaattag |
785 |
Q |
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| T |
46951968 |
aaacgacgttgggaataatgaaaacggggcatgcatcaatccaacaccaggaaccattcctgatttctgtaattag |
46951893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 609 - 697
Target Start/End: Complemental strand, 46945507 - 46945419
Alignment:
| Q |
609 |
gagagagattcttgaagaaatttaccatctaaactaacacggtcaacaagttcattgaatataggtgccaaatcacaagcttgcttcca |
697 |
Q |
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| T |
46945507 |
gagagggattgttggagaaattttccatccaagctaacacgatcaacaagttcattgaataaaggtgacaaatcacaagcttgtttcca |
46945419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 423 - 491
Target Start/End: Complemental strand, 46945688 - 46945620
Alignment:
| Q |
423 |
agcatcttggaatgaatatctaaaagtctagaggtaaattcgtccacttgcttagttctgcattgagat |
491 |
Q |
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| T |
46945688 |
agcattttggcatgaatatctaaaagtctagaggtaaattcatctgctttcttagttctgcattgagat |
46945620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 129 - 259
Target Start/End: Original strand, 49698201 - 49698331
Alignment:
| Q |
129 |
agacacaatttttatggagtaaaattgctcgtggccaaccaaacatagacgtaatagaaagaaagtgagacgggtctgaggcagttatagagacacatgc |
228 |
Q |
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| T |
49698201 |
agacacaatttttatggagtaaaattgctcgtggccaaccaaacatagacgtaatagaaagaaagtgagacgggtctgaggcagttgtagagacacatgc |
49698300 |
T |
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| Q |
229 |
atatttttcccccatatattctggttacatg |
259 |
Q |
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| T |
49698301 |
atatttttcccccatatattctggttacatg |
49698331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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