View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12080_low_6 (Length: 746)

Name: NF12080_low_6
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12080_low_6
NF12080_low_6
[»] scaffold0064 (2 HSPs)
scaffold0064 (1-727)||(3933-4660)
scaffold0064 (48-322)||(21550-21824)
[»] scaffold0116 (1 HSPs)
scaffold0116 (48-262)||(10599-10813)


Alignment Details
Target: scaffold0064 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 727
Target Start/End: Complemental strand, 4660 - 3933
Alignment:
Q  1 atcaggaagcgtgtcttcaacatcatccccaaatccactttccaccgaacatcctcccaacttgaaaacaccataagcaatgtttcttggctattacgta 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||    
T  4660 atcaggaagcgtgtcttcaacatcatccccaaagccactttccaccgaacatcctcccaacttgaaaacaccataggcaatgtttcttggctattatata 4561  T
Q  101 tctcccactgcaatgaagatcatgatagtgaaaatcacatccttccttccataattttaaatgaccccatggttaccttaatttggcaacttattgccag 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4560 tctcccgctgcaatgaagatcatgatagtgaaaatcacatccttccttccataattttaaatgaccccatggttaccttaatttgggaacttattgccag 4461  T
Q  201 cctatgtaccagctcgtaggaggatcgttcagacagtgcttcttctcttgtatcacttgcacaccgaagcaaccattacggaaaaatgatcattgaagaa 300  Q
    |||||||||| ||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4460 cctatgtaccggctcacaggagtatcgttcagacagtgctgcttctcttgtatcacttgcacaccgaagcaaccattacggaaaaatgatcattgaagaa 4361  T
Q  301 ggtggagttggaccccttttgatgttcatggacgaaagggaacaaagaaggtcagaaaaatgctgcaagagccatatctctcctgaaagccataaaatcc 400  Q
    |||||||||||||||||||||| |||  |||| | ||||||||| |||||| |||||       |||||||||||||||||||| ||||||| ||| |||    
T  4360 ggtggagttggaccccttttgaagttggtggatg-aagggaacacagaaggccagaa-------gcaagagccatatctctcctcaaagccagaaactcc 4269  T
Q  401 gttgtcatactcatcaccagcacatctatgcgggcgggggagttaagtgacaggttcagctaagcagtaaactcaggagataaaataaaactcttgaaga 500  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||| |    
T  4268 gttgtcatactcatcaccagcacatctatgcgggcgcgggagttaagtggcaggttcagcttagtagtaaactcgggagataaaataaaactcttgaata 4169  T
Q  501 tgaactttgttgcctatt-tgattctactaagcttgaaattaatatgtgcaattgtgcggaaaaaatacttggtttacagttacac----nnnnnnnnnn 595  Q
     |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||                  
T  4168 agaactttgttacctattgtgattctactaagcttgaaattaatatgtgcaattgtgcaaaaagaatacttggtttacagttacacaccaggaaaaaaaa 4069  T
Q  596 nnnnnnnctaatgtatttggcacaaattcttact----gaaagaatataaaaaacaaataaatgtcaagttgcacggtttatttttagtgggttacaata 691  Q
           ||||||| |||||||||||||||||||    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  4068 aaaaaaactaatgtgtttggcacaaattcttactgaaagaaagaatataaaaaacaggtaaatgtcaagttgcacggtttatttttagtgggttacaata 3969  T
Q  692 taggccaataacttaaaaattgcaattccagtatgt 727  Q
    |||| |||||||||||||||| ||||||||||||||    
T  3968 taggtcaataacttaaaaatttcaattccagtatgt 3933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 48 - 322
Target Start/End: Complemental strand, 21824 - 21550
Alignment:
Q  48 aacatcctcccaacttgaaaacaccataagcaatgtttcttggctattacgtatctcccactgcaatgaagatcatgatagtgaaaatcacatccttcct 147  Q
    |||||| ||||||||||||||| |||| | | ||||||| |||||  ||| |||||||| || | ||||| ||||||| ||||| |||| ||||||||||    
T  21824 aacatcttcccaacttgaaaactccatcaacgatgtttcctggcttctacatatctcccgctccgatgaaaatcatgacagtgagaatctcatccttcct 21725  T
Q  148 tccataattttaaatgaccccatggttaccttaatttggcaacttattgccagcctatgtaccagctcgtaggaggatcgttcagacagtgcttcttctc 247  Q
    ||||||  ||| || || |||||  |  ||| ||||||| |||| ||||| ||||| |||||  ||||  ||||||||||||| |||  |||| ||| ||    
T  21724 tccatagctttcaacgagcccatcctcgcctcaatttgggaactgattgctagcctttgtactggctcacaggaggatcgttcggacgctgctgcttgtc 21625  T
Q  248 ttgtatcacttgcacaccgaagcaaccattacggaaaaatgatcattgaagaaggtggagttggaccccttttga 322  Q
    |||||||||||||||| | |||  ||| |||| | |||||||||||  | ||||| ||||||||||| |||||||    
T  21624 ttgtatcacttgcacatcaaagtgaccgttacagtaaaatgatcatccaggaaggaggagttggacctcttttga 21550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 262
Target Start/End: Complemental strand, 10813 - 10599
Alignment:
Q  48 aacatcctcccaacttgaaaacaccataagcaatgtttcttggctattacgtatctcccactgcaatgaagatcatgatagtgaaaatcacatccttcct 147  Q
    ||||||| |||||||||||||| |||||| ||| |||   |||||  ||| |||||||| || | ||||| | | ||| | |||||||   |||||||||    
T  10813 aacatccacccaacttgaaaactccataaacaacgttcactggctcctacatatctcccgctccgatgaaaagcttgacaatgaaaattttatccttcct 10714  T
Q  148 tccataattttaaatgaccccatggttaccttaatttggcaacttattgccagcctatgtaccagctcgtaggaggatcgttcagacagtgcttcttctc 247  Q
    ||||||  ||| ||||| |||||  |  ||||||||||| | || ||||| ||||| ||||| |||||  | ||||||||||| ||   |||| ||| ||    
T  10713 tccatagctttcaatgagcccatcctcgccttaatttgggagctgattgctagcctttgtactagctcacaagaggatcgttcggatgctgctgcttgtc 10614  T
Q  248 ttgtatcacttgcac 262  Q
    |||| ||||||||||    
T  10613 ttgtgtcacttgcac 10599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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