View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12080_low_9 (Length: 591)

Name: NF12080_low_9
Description: NF12080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12080_low_9
NF12080_low_9
[»] chr4 (9 HSPs)
chr4 (16-591)||(31162246-31162827)
chr4 (378-499)||(31151061-31151183)
chr4 (366-591)||(31488861-31489085)
chr4 (366-591)||(31159869-31160093)
chr4 (363-591)||(31529128-31529355)
chr4 (484-591)||(31501505-31501610)
chr4 (485-591)||(31030348-31030452)
chr4 (485-591)||(31020467-31020571)
chr4 (411-587)||(31496261-31496436)
[»] chr6 (8 HSPs)
chr6 (466-591)||(12781345-12781468)
chr6 (466-546)||(12785580-12785658)
chr6 (462-541)||(12782146-12782223)
chr6 (482-591)||(33060151-33060258)
chr6 (411-451)||(33265617-33265657)
chr6 (411-451)||(33274761-33274801)
chr6 (375-451)||(33288310-33288386)
chr6 (559-591)||(33361094-33361126)
[»] chr2 (1 HSPs)
chr2 (559-591)||(17438141-17438173)


Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 16 - 591
Target Start/End: Complemental strand, 31162827 - 31162246
Alignment:
Q  16 gcaccaacctacaccaatcaaccacaaaaaagacatcaattccacgtgcattgattcatttttagttttactccaaagtatgttgagaagtcgctgtttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  31162827 gcaccaacctacaccaatcaaccacaaaaaagacatcaattccacgtgcattgattcatttt-agttttactccaaaatatgttgagaagtcgctgtttg 31162729  T
Q  116 gacttgcaacttgtgtgtgtgaaagtgatgtaattaattgggtgagtgaagtagggtatactgaaaaggaaaaccgaaagatgtgggaactttactatct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31162728 gacttgcaacttgtgtgtgtgaaagtgatgtaattaattgggtgagtgaagtagggtatactgagaaggaaaaccgaaagatgtgggaactttactatct 31162629  T
Q  216 ttgagnnnnnnntcaactaacatgctattgctaagaataagaagctaggaagaagcatgcttgaagttgaaacttgaaatggtaaaaacgggaatgcttg 315  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31162628 ttgagaaaaaaatcaactaacatgctattgctaagaataagaagctaggaagaagcatgcttgaagttgaaacttgaaatggtaaaaacgggaatgcttg 31162529  T
Q  316 ctttgtttaattccacatttcagacgctattagttaca-------ctgtcctaactccaaagaaaaggtatttttgcatttagggatgattctaagctca 408  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31162528 ctttgtttaattccacatttcagacgctattagttacactatctcctgtcctaactccaaagaaaaggtatttttgcatttagggatgattctaagctca 31162429  T
Q  409 acaaaggtgaatccattggatcagagctccttggagcaatcgagactctctgattttcattgtggtattttctaagaactatgcttcctcaactattggt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31162428 acaaaggtgaatccattggatcagagctccttggagcaatcgagactctctgattttcattgtggtattttctaagaactatgcttcctcaactattggt 31162329  T
Q  509 gcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgttgatcct 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31162328 gcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgttgatcct 31162246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 499
Target Start/End: Complemental strand, 31151183 - 31151061
Alignment:
Q  378 atttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcga-gactctctgattttcattgtggtat 476  Q
    |||||| |||| ||||||||| ||||||| || |||||||||||||| | | | || |||||| ||||||| || ||||||| ||||||  ||||||| |    
T  31151183 attttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttt 31151084  T
Q  477 tttctaagaactatgcttcctca 499  Q
    | |||||||||||||||||||||    
T  31151083 tctctaagaactatgcttcctca 31151061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 366 - 591
Target Start/End: Original strand, 31488861 - 31489085
Alignment:
Q  366 caaagaaaaggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcga-gactctctgattt 464  Q
    ||||||||||| |||||||| ||||| |||||  |||||||  | ||||||||||| || | | | |||||| || | ||||| || |  |||| | |||    
T  31488861 caaagaaaaggcatttttgcgtttagagatgacactaagcttcaaaaaggtgaatcgatagcacccgagctcattcgtgcaattgaagggtctcaggttt 31488960  T
Q  465 tcattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgtt 564  Q
    |||||| |||  | || || ||||||||||||||||||  |||||||||| |||||| |||| ||||||||||| || | |||| |  | ||| | ||||    
T  31488961 tcattgcggtcctctccaaaaactatgcttcctcaact--tggtgcttgcgagaattggaatacatccttcactacagtcaagtttttggaagacgtgtt 31489058  T
Q  565 ctgcctgttttctatgatgttgatcct 591  Q
    || |||||||| |||||||||||||||    
T  31489059 cttcctgttttttatgatgttgatcct 31489085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 591
Target Start/End: Complemental strand, 31160093 - 31159869
Alignment:
Q  366 caaagaaaaggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcga-gactctctgattt 464  Q
    ||||||||||| ||  ||||||| |||||||||||||| || || |||||||||||||| | | | |||||||||   ||||| || | |||   | |||    
T  31160093 caaagaaaaggcatcgttgcattcagggatgattctaacctgaagaaaggtgaatccatagcacccgagctccttcatgcaattgaagcctcaaaggttt 31159994  T
Q  465 tcattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgtt 564  Q
    | |||||  | || || || |||||||||||||||||   |||||||||| ||| || |||| |||||||||||||| | |||| || | ||  | ||||    
T  31159993 ttattgtactcttctcaaaaaactatgcttcctcaaca--tggtgcttgcgagagttggaatacatccttcactgcagtcaagtttctggaactcgtgtt 31159896  T
Q  565 ctgcctgttttctatgatgttgatcct 591  Q
    || ||| ||||||||||||||||||||    
T  31159895 ctccctattttctatgatgttgatcct 31159869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 363 - 591
Target Start/End: Complemental strand, 31529355 - 31529128
Alignment:
Q  363 ctccaaagaaaaggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcg-agactctctga 461  Q
    ||||||| || ||| ||| |||||||||| |||||  ||||||| || ||||||||||| || | | | || |||||| | || |||| || ||||| ||    
T  31529355 ctccaaataagaggcattgttgcatttagagatgacactaagcttaagaaaggtgaatctatagcacctgaactccttcgtgctatcgaagcctctcgga 31529256  T
Q  462 ttttcattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcat 561  Q
     ||||||||| || || || || |||||||||||||||||  |||||||||||  |||||  ||| ||||||||| ||| |  || | || | ||  | |    
T  31529255 ctttcattgttgtcttctcaaacaactatgcttcctcaac--ttggtgcttgcgggaattgcaatacatccttcattgcgtacaactttctggaaaacgt 31529158  T
Q  562 gttctgcctgttttctatgatgttgatcct 591  Q
    ||||| ||||||||||||||||||||||||    
T  31529157 gttctccctgttttctatgatgttgatcct 31529128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 591
Target Start/End: Original strand, 31501505 - 31501610
Alignment:
Q  484 gaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatg 583  Q
    ||||||||||||||||| |  |||||||||||||||||||||   |||||| | ||| |  | || ||  |||  |||||||||||||||||||||||||    
T  31501505 gaactatgcttcctcaatt--tggtgcttgcaagaattagaaaagatccttgaatgcgtccacgtatctaaaaaacatgttctgcctgttttctatgatg 31501602  T
Q  584 ttgatcct 591  Q
    ||||||||    
T  31501603 ttgatcct 31501610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 591
Target Start/End: Complemental strand, 31030452 - 31030348
Alignment:
Q  485 aactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgt 584  Q
    ||||||||||||||||||  |||||||||| |||||| | |  ||||||| |||||| | |||| || | ||| | |||||| |||||||| ||||||||    
T  31030452 aactatgcttcctcaact--tggtgcttgcgagaattggtacacatccttgactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgt 31030355  T
Q  585 tgatcct 591  Q
    |||||||    
T  31030354 tgatcct 31030348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 591
Target Start/End: Complemental strand, 31020571 - 31020467
Alignment:
Q  485 aactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgt 584  Q
    |||||| |||||||||||  |||||||||| |||||| | |  ||||||| |||||| | |||| || | ||| | |||||| |||||||| ||||||||    
T  31020571 aactattcttcctcaact--tggtgcttgcgagaattggtacacatccttgactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgt 31020474  T
Q  585 tgatcct 591  Q
    |||||||    
T  31020473 tgatcct 31020467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 587
Target Start/End: Original strand, 31496261 - 31496436
Alignment:
Q  411 aaaggtgaatccattggatcagagctccttggagcaatcgaga-ctctctgattttcattgtggtattttctaagaactatgcttcctcaactattggtg 509  Q
    |||||||||||||| ||| |  |||||||| | ||||| || | ||||| | ||||  ||||||| || || | ||||||||||| |||||||  | |||    
T  31496261 aaaggtgaatccataggacctaagctcctttgtgcaattgaaaactctcaggtttttgttgtggtcttatcaaggaactatgctttctcaact--tcgtg 31496358  T
Q  510 cttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgttga 587  Q
    ||||||||||||||||   |||||| | ||  | || || ||  |||  |||||||||||||||||||||||||||||    
T  31496359 cttgcaagaattagaaaagatccttgaatgggtcaaggtatctaaaaaacatgttctgcctgttttctatgatgttga 31496436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 466 - 591
Target Start/End: Complemental strand, 12781468 - 12781345
Alignment:
Q  466 cattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttc 565  Q
    |||||| ||||| |||||||||||||||||||||||  |||||| |||| |||||| |||| ||||||||| |||| ||||      | ||  || ||||    
T  12781468 cattgttgtattctctaagaactatgcttcctcaac--ttggtgtttgcgagaattggaatacatccttcattgcagtaaaaaacatggaaaacacgttc 12781371  T
Q  566 tgcctgttttctatgatgttgatcct 591  Q
    | ||||||||||||||||||||||||    
T  12781370 ttcctgttttctatgatgttgatcct 12781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 466 - 546
Target Start/End: Complemental strand, 12785658 - 12785580
Alignment:
Q  466 cattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaa 546  Q
    |||||| ||||| ||||||||||||||||| |||||  |||||| |||| |||||| |||| ||||||||| |||| ||||    
T  12785658 cattgttgtattctctaagaactatgcttcttcaac--ttggtgtttgcgagaattggaatacatccttcattgcagtaaa 12785580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 541
Target Start/End: Complemental strand, 12782223 - 12782146
Alignment:
Q  462 ttttcattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgca 541  Q
    |||||||||| ||||| ||||| ||||||||||| |||||  |||||| |||| |||||||| || ||||||| ||||||    
T  12782223 ttttcattgttgtattctctaaaaactatgcttcttcaac--ttggtgtttgcgagaattagcatacatccttaactgca 12782146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 591
Target Start/End: Complemental strand, 33060258 - 33060151
Alignment:
Q  482 aagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatga 581  Q
    ||||||||||||||||||||   |||||||||||||||||||||   ||   | | |||||||| |  || | ||  |||||||| ||||||||||||||    
T  33060258 aagaactatgcttcctcaacg--tggtgcttgcaagaattagaaaagatatgtgaatgcattaaggggtcgggaaaacatgttcttcctgttttctatga 33060161  T
Q  582 tgttgatcct 591  Q
    ||||||||||    
T  33060160 tgttgatcct 33060151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 451
Target Start/End: Complemental strand, 33265657 - 33265617
Alignment:
Q  411 aaaggtgaatccattggatcagagctccttggagcaatcga 451  Q
    |||||||||||||||||| | ||||||||| ||||||||||    
T  33265657 aaaggtgaatccattggacccgagctccttcgagcaatcga 33265617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 451
Target Start/End: Complemental strand, 33274801 - 33274761
Alignment:
Q  411 aaaggtgaatccattggatcagagctccttggagcaatcga 451  Q
    |||||||||||||||||| | ||||||||| ||||||||||    
T  33274801 aaaggtgaatccattggacccgagctccttcgagcaatcga 33274761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 451
Target Start/End: Complemental strand, 33288386 - 33288310
Alignment:
Q  375 ggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccattggatcagagctccttggagcaatcga 451  Q
    ||||||| |||||||||||||||  | || ||  | |||||||||||||| ||| | ||||||||| ||||||||||    
T  33288386 ggtatttatgcatttagggatgacaccaatcttcaaaaaggtgaatccataggacctgagctccttcgagcaatcga 33288310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 559 - 591
Target Start/End: Complemental strand, 33361126 - 33361094
Alignment:
Q  559 catgttctgcctgttttctatgatgttgatcct 591  Q
    |||||||| ||||||||||||||||||||||||    
T  33361126 catgttcttcctgttttctatgatgttgatcct 33361094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 559 - 591
Target Start/End: Original strand, 17438141 - 17438173
Alignment:
Q  559 catgttctgcctgttttctatgatgttgatcct 591  Q
    |||||||| ||||||||||||||||||||||||    
T  17438141 catgttcttcctgttttctatgatgttgatcct 17438173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University